Gamma-Aminobutyric Acid Type B Receptor Subunit 1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Gamma-Aminobutyric Acid Type B Receptor Subunit 1
  Conformer 1
(PDB) 		7c7q (A)
  Conformer 2
(PDB) 		7c7s (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 190 0.67   290 - 430   535 - 580   750 - 752
2 217 0.95   168 - 289   431 - 533
3 264 0.87   581 - 749   755 - 860

Sequence


           ________________________________________________________________________________________________________________________ 
 7c7q(A) : **ERRAVYIGALFPMSGGWPGGQACQPAVEMALEDVNSRRDILPDYELKLIHHDSKCDPGQATKYLYELLYNDPIKIILMPGCSSVSTLVAEAARMWNLIVLSYGSSSPALSNRQRFPTF 
         :                                                                                                                          
 7c7s(A) : HSERRAVYIGALFPMSGGWPGGQACQPAVEMALEDVNSRRDILPDYELKLIHHDSKCDPGQATKYLYELLYNDPIKIILMPGCSSVSTLVAEAARMWNLIVLSYGSSSPALSNRQRFPTF 
           ________________________________________________________________________________________________________________________ 

           ___289__________________________________________________________________________________________________________________ 
 7c7q(A) : FRTHPSATLHNPTRVKLFEKWGWKKIATIQQTTEVFTSTLDDLEERVKEAGIEITFRQSFFSDPAVPVKNLKRQDARIIVGLFYETEARKVFCEVYKERLFGKKYVWFLIGWYADNWFKI 
         :                                                                                                                          
 7c7s(A) : FRTHPSATLHNPTRVKLFEKWGWKKIATIQQTTEVFTSTLDDLEERVKEAGIEITFRQSFFSDPAVPVKNLKRQDARIIVGLFYETEARKVFCEVYKERLFGKKYVWFLIGWYADNWFKI 
           ___289__________________________________________________________________________________________________________________ 

           _____________________427___________________________________________________________________________________________527__ 
 7c7q(A) : YDPSINCTVDEMTEAVEGHITTEIVMLNPANTRSISNMTSQEFVEKLTKRLKRHPEETGGFQEAPLAYDAIWALALALNKTS--rLEDFNYNNQTITDQIYRAMNSSSFEGVSGHVVFDA 
         :                                                                                                                          
 7c7s(A) : YDPSINCTVDEMTEAVEGHITTEIVMLNPANTRSISNMTSQEFVEKLTKRLKRHPEETGGFQEAPLAYDAIWALALALNKTSgVRLEDFNYNNQTITDQIYRAMNSSSFEGVSGHVVFDA 
           _____________________427___________________________________________________________________________________________527__ 

           ___________________________________________575__________________________________________________________________________ 
 7c7q(A) : SGSRMAWTLIEQLQGGSYKKIGYYDSTKDDLSWSKTDKWIGGSPPADQTLVIKTFRFLSQKLFISVSVLSSLGIVLAVVCLSFNIYNSHVRYIQNSQPNLNNLTAVGCSLALAAVFPLGL 
         :                                                                                                                          
 7c7s(A) : SGSRMAWTLIEQLQGGSYKKIGYYDSTKDDLSWSKTDKWIGGSPPADQTLVIKTFRFLSQKLFISVSVLSSLGIVLAVVCLSFNIYNSHVRYIQNSQPNLNNLTAVGCSLALAAVFPLGL 
           ___________________________________________575__________________________________________________________________________ 

           ____________________________________________________________________________________746_________________________________ 
 7c7q(A) : DGYHIGRNQFPFVCQARLWLLGLGFSLGYGSMFTKIWWVHTVFT-lEPWKLYATVGLLVGMDVLTLAIWQIVDPLHRTIETFAKEEPKEDIDVSILPQLEHCSSRKMNTWLGIFYGYKGL 
         :                                                                                                                          
 7c7s(A) : DGYHIGRNQFPFVCQARLWLLGLGFSLGYGSMFTKIWWVHTVFTKlEPWKLYATVGLLVGMDVLTLAIWQIVDPLHRTIETFAKEEPKEDIDVSILPQLEHCSSRKMNTWLGIFYGYKGL 
           ____________________________________________________________________________________746_________________________________ 

           _____________________________________________________________________________________                                    
 7c7q(A) : LLLLGIFLAYETKSVSTEKINDHRAVGMAIYNVAVLCLITAPVTMILSSQQDAAFAFASLAIVFSSYITLVVLFVPKMRRLIT**                                    
         :                                                                                                                          
 7c7s(A) : LLLLGIFLAYETKSVSTEKINDHRAVGMAIYNVAVLCLITAPVTMILSSQQDAAFAFASLAIVFSSYITLVVLFVPKMRRLITRG                                    
           _____________________________________________________________________________________                                    

Morph
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		26.5
Translation
(A) 		-0.4
Closure
(%) 		96.4
Bending Residues
( green ) 		  289 - 291
  427 - 432
  527 - 537
Bending Region Analysis
Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( yellow ) 		3
Rotation Angle
(deg) 		35.9
Translation
(A) 		-1.5
Closure
(%) 		56.0
Bending Residues
( green ) 		  575 - 581
  746 - 755
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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