DynDom - Protein Domain Motions

Gamma-Aminobutyric Acid Type B Receptor Subunit 1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	Gamma-Aminobutyric Acid Type B Receptor Subunit 1
Conformer 1 (PDB)	6uo8 (A)
Conformer 2 (PDB)	6vjm (A)
Window Length	5
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	403	3.93	168 - 578
2	251	1.95	579 - 690 722 - 860

Sequence

`________________________________________________________________________________________________________________________` `6uo8(A) : *ERRAVYIGALFPMSGGWPGGQACQPAVEMALEDVNSRRDILPDYELKLIHHDSKCDPGQATKYLYELLYNDPIKIILMPGCSSVSTLVAEAARMWNLIVLSYGSSSPALSNRQRFPTFF` `:` `6vjm(A) : SERRAVYIGALFPMSGGWPGGQACQPAVEMALEDVNSRRDILPDYELKLIHHDSKCDPGQATKYLYELLYNDPIKIILMPGCSSVSTLVAEAARMWNLIVLSYGSSSPALSNRQRFPTFF` `________________________________________________________________________________________________________________________` `________________________________________________________________________________________________________________________` `6uo8(A) : RTHPSATLHNPTRVKLFEKWGWKKIATIQQTTEVFTSTLDDLEERVKEAGIEITFRQSFFSDPAVPVKNLKRQDARIIVGLFYETEARKVFCEVYKERLFGKKYVWFLIGWYADNWFKIY` `:` `6vjm(A) : RTHPSATLHNPTRVKLFEKWGWKKIATIQQTTEVFTSTLDDLEERVKEAGIEITFRQSFFSDPAVPVKNLKRQDARIIVGLFYETEARKVFCEVYKERLFGKKYVWFLIGWYADNWFKIY` `________________________________________________________________________________________________________________________` `________________________________________________________________________________________________________________________` `6uo8(A) : DPSINCTVDEMTEAVEGHITTEIVMLNPANTRSISNMTSQEFVEKLTKRLKRHPEETGGFQEAPLAYDAIWALALALNKTSrLEDFNYNNQTITDQIYRAMNSSSFEGVSGHVVFDASGS` `:` `6vjm(A) : DPSINCTVDEMTEAVEGHITTEIVMLNPANTRSISNMTSQEFVEKLTKRLKRHPEETGGFQEAPLAYDAIWALALALNKTSrLEDFNYNNQTITDQIYRAMNSSSFEGVSGHVVFDASGS` `________________________________________________________________________________________________________________________` `___________________________________________578__________________________________________________________________________` `6uo8(A) : RMAWTLIEQLQGGSYKKIGYYDSTKDDLSWSKTDKWIGGSPPADQTLVIKTFRFLSQKLFISVSVLSSLGIVLAVVCLSFNIYNSHVRYIQNSQPNLNNLTAVGCSLALAAVFPLGLDGY` `:` `6vjm(A) : RMAWTLIEQLQGGSYKKIGYYDSTKDDLSWSKTDKWIGGSPPADQTLVIKTFRFLSQKLFISVSVLSSLGIVLAVVCLSFNIYNSHVRYIQNSQPNLNNLTAVGCSLALAAVFPLGLDGY` `___________________________________________578__________________________________________________________________________` `________________________________________________________________________________________________________________________` `6uo8(A) : HIGRNQFPFVCQARLWLLGLGFSLGYGSMFTKIWWVHTVFTKKEEKKEWRKTLEPWKLYATVGLLVGMDVLTLAIWQIVDPLHRTIETFAKEEPKEDIDVSILPQLEHCSSRKMNTWLGI` `:` `6vjm(A) : HIGRNQFPFVCQARLWLLGLGFSLGYGSMFTKIWWVHTVFTKK------rKTLEPWKLYATVGLLVGMDVLTLAIWQIVDPLHRTIETFAKEEPKEDIDVSILPQLEHCSSRKMNTWLGI` `________________________________________________________________________________________________________________________` `__________________________________________________________________________________________` `6uo8(A) : FYGYKGLLLLLGIFLAYETKSVSTEKINDHRAVGMAIYNVAVLCLITAPVTMILSSQQDAAFAFASLAIVFSSYITLVVLFVPKMRRLIT` `:` `6vjm(A) : FYGYKGLLLLLGIFLAYETKSVSTEKINDHRAVGMAIYNVAVLCLITAPVTMILSSQQDAAFAFASLAIVFSSYITLVVLFVPKMRRLIT` `__________________________________________________________________________________________`

Morph

Morph animation in progress.
Status: Initialising

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.

play backwards

pause

play forwards

Domain Pairs

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( red )	2
Rotation Angle (deg)	40.6
Translation (A)	3.4
Closure (%)	22.1
Bending Residues ( green )	578 - 579
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

Download and extract PyMOL PML script file

Download