Hypothetical Oxidoreductase Yqhd

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Hypothetical Oxidoreductase Yqhd
  Conformer 1
(PDB) 		1oj7 (A)
  Conformer 2
(PDB) 		4qgs (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 221 0.71   4 - 8   16 - 16   137 - 138   140 - 149   177 - 385
2 155 0.67   9 - 15   17 - 136   139 - 139   150 - 176

Sequence


           _________7______15______________________________________________________________________________________________________ 
 1oj7(A) : KAGLNNFNLHTPTRILFGKGAIAGLREQIPHDARVLITYGGGSVKKTGVLDQVLDALKGMDVLEFGGIEPNPAYETLMNAVKLVREQKVTFLLAVGGGSVLDGTKFIAAAANYPENIDPW 
         :                                                                                                                          
 4qgs(A) : ****NNFNLHTPTRILFGKGAIAGLREQIPHDARVLITYGGGSVKKTGVLDQVLDALKGMDVLEFGGIEPNPAYETLMNAVKLVREQKVTFLLAVGGGSVLDGTKFIAAAANYPENIDPW 
           _________7______15______________________________________________________________________________________________________ 

           ________________136__________149________________________176_____________________________________________________________ 
 1oj7(A) : HILQTGGKEIKSAIPMGCVLTLPATGSESNAGAVISRKTTGDKQAFHSAHVQPVFAVLDPVYTYTLPPRQVANGVVDAFVHTVEQYVTKPVDAKIHDRFAEGILLTLIEDGPKALKEPEN 
         :                                                                                                                          
 4qgs(A) : HILQTGGKEIKSAIPMGCVLTLPA------aGAVISRKTTGDKQAFHSAHVQPVFAVLDPVYTYTLPPRQVANGVVDAFVHTVEQYVTKPVDAKIQDRFAEGILLTLIEDGPKALKEPEN 
           ________________136__________149________________________176_____________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1oj7(A) : YDVRANVMWAATQALNGLIGAGVPQDWATHMLGHELTAMHGLDHAQTLAIVLPALWNEKRDTKRAKLLQYAERVWNITEGSDDERIDAAIAATRNFFEQLGVPTHLSDYGLDGSSIPALL 
         :                                                                                                                          
 4qgs(A) : YDVRANVMWAATQAENGLIGAGVPQDWATHMLGHELTAMHGLDHAQTLAIVLPALWNEKRDTKRAKLLQYAERVWNITEGSDDERIDAAIAATRNFFEQLGVPTHLSDYGLDGSSIPALL 
           ________________________________________________________________________________________________________________________ 

           ______________________________                                                                                           
 1oj7(A) : KKLEEHGMTQLGENHDITLDVSRRIYEAAR                                                                                           
         :                                                                                                                          
 4qgs(A) : KKLEEHGMTQLGENHDITLDVSRRIYEAAR                                                                                           
           ______________________________                                                                                           

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		12.0
Translation
(A) 		0.2
Closure
(%) 		82.5
Bending Residues
( green ) 		  7 - 9
  15 - 17
  136 - 141
  149 - 150
  176 - 177
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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