Imine Reductase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Imine Reductase
  Conformer 1
(PDB) 		5a9s (A)
  Conformer 2
(PDB) 		5a9r (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 136 0.57   7 - 116   121 - 135   138 - 140   148 - 158
2 96 0.54   117 - 120   136 - 137   141 - 147   159 - 196   236 - 280

Sequence


           ________________________________________________________________________________________________________________116_120_ 
 5a9s(A) : TDQNLPVTVAGLGPMGSALAAALLDRGHDVTVWNRSPGKAAPLVAKGARQADDIVDAVSASRLLVVCLAD---lYSALGPAREALRGRVVVNLNSGTPKEANEALRWAERHGTGYLDGAI 
         :                                                                                                                          
 5a9r(A) : ***NLPVTVAGLGPMGSALAAALLDRGHDVTVWNRSPGKAAPLVAKGARQADDIVDAVSASRLLVVCLADYDALYSALGPAREALRGRVVVNLNSGTPKEANEALRWAERHGTGYLDGAI 
           ________________________________________________________________________________________________________________116_120_ 

           ___________135__140____147________158___________________________________________________________________________________ 
 5a9s(A) : MVPPAMVGHPGSVFLYSGSAEVFEEYKETLAGLGDPVHLGTEAGLAVLYNTALLSMMYSSMNGFLHAAALVGSAGVPAAEFTKLAVDWFLPAVIGQIIKAEAPTID------dAGSLEMN 
         :                                                                                                                          
 5a9r(A) : MVPPAMVGHPGSVFLYSGSAEVFEEYKETLAGLGDPVHLGTEAGLAVLYNTALLSMMYSSMNGFLHAAALVGSAGVPAAEFTKLAVDWFLPAVIGQIIKAEAPTIDEGVYPGDAGSLEMN 
           ___________135__140____147________158___________________________________________________________________________________ 

           _________________________________________________                                                                        
 5a9s(A) : VTTLKHIIGTSQEQGVDTEIPVRNKELLDRAVAAGFGESSYYSVIELWR                                                                        
         :                                                                                                                          
 5a9r(A) : VTTLKHIIGTSQEQGVDTEIPVRNKELLDRAVAAGFGESSYYSVIELWR                                                                        
           _________________________________________________                                                                        

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		8.7
Translation
(A) 		-0.1
Closure
(%) 		9.2
Bending Residues
( green ) 		  116 - 117
  120 - 121
  135 - 138
  140 - 141
  147 - 148
  158 - 159
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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