Imine Reductase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Imine Reductase
  Conformer 1
(PDB) 		4d3f (B)
  Conformer 2
(PDB) 		4oqy (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 164 0.55   25 - 188
2 103 1.24   189 - 303

Sequence


           ________________________________________________________________________________________________________________________ 
 4d3f(B) : AVGNRKSVTVIGLGPMGQAMADVFLEYGYSVTVWNRTSSKADQLVAKGAIRVSTVNEALAANELVILSLTDYNVMYSILEPVSENLFGKVLVNLSSDTPEKARKAAKWLEDRGARHITGG 
         :                                                                                                                          
 4oqy(B) : ****KQSVTVIGLGPMGQAMVNTFLDNGHEVTVWNRTASKAEALVARGAVLAPTVEDALSANELIVLSLTDYDAVYAILEPVTGSLSGKVIANLSSDTPDKAREAAKWAAKHGAKHLTGG 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________188_____________________________________________________________________ 
 4d3f(B) : VQVPPSGIGKSESYTYYSGDRVVFEAHRETLEVLTSSDYRGEDPGLAMLYYQIQMDIFWTAMLSYLHALAIANANGITAEQFLPYASAMMSSLPKFVEFYTPRLDEGEHPGDVDRLAMGL 
         :                                                                                                                          
 4oqy(B) : VQVPPPLIGKPESSTYYSGPKDVFDAHEDTLKVLTNADYRGEDAGLAAMYYQAQMTIFWTTMLSYYQTLALGQANGVSAKELLPYATMMTSMMPHFLELY------------vDRLAMGA 
           ________________________________________________169_____________________________________________________________________ 

           __________________________________________________                                                                       
 4d3f(B) : ASVEHVVHTTQEAGIDIALPATVLEVFRRGMKTGHASDSFTSLIEIFKN*                                                                       
         :                                                                                                                          
 4oqy(B) : ASVDHVLHTHQDAGVSTVLPAAVAEIFKAGMEKGFAENSFSSLIEVLKKP                                                                       
           __________________________________________________                                                                       

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		15.5
Translation
(A) 		-1.0
Closure
(%) 		5.6
Bending Residues
( green ) 		  188 - 189
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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