Putative Branched Chain Amino Acid Abc Transporter, Periplasmic Amino Acid-Binding Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Putative Branched Chain Amino Acid Abc Transporter, Periplasmic Amino Acid-Binding Protein
  Conformer 1
(PDB) 		4xfk (A)
  Conformer 2
(PDB) 		7jfn (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 264 0.62   83 - 211   318 - 333   340 - 426   429 - 448   457 - 468
2 122 0.58   212 - 317   334 - 339   427 - 428   449 - 456

Sequence


           ________________________________________________________________________________________________________________________ 
 4xfk(A) : AEPLKIALVETLSGPQASTGLLYRAAVLYQLGKINEAGGFNGEKIQILEYDNQGGPVGAADRVKAAIADGAQIIVQGSSSAVAGQITEDVRKYNLRNKGKEVLYLNLGAEALELTGSKCH 
         :                                                                                                                          
 7jfn(A) : AEPLKIALVETLSGPQASTGLLYRAAVLYQLGKINEAGGFNGEKIQILEYDNQGGPVGAADRVKAAIADGAQIIVQGSSSAVAGQITEDVRKYNLRNKGKEVLYLNLGAEALELTGSKCH 
           ________________________________________________________________________________________________________________________ 

           ________211______________________________________________________________________________________________________316____ 
 4xfk(A) : FYHFRFSPNAAIRFKTVAQGMKDKGILGERAYSINQNYSWGVDVENTVVANAKEIGYEVVDKTLHEVNKIQDFSPYVAKIQAANVDTVFTGNWSNDLLLLMKAASGAGLKAKFATSFLDQ 
         :                                                                                                                          
 7jfn(A) : FYHFRFSPNAAIRFKTVAQGMKDKGILGERAYSINQNYSWGVDVENTVVANAKEIGYEVVDKTLHEVNKIQDFSPYVAKIQAANVDTVFTGNWSNDLLLLMKAASGAGLKAKFATSFLDQ 
           ________211______________________________________________________________________________________________________316____ 

           ___326__________339____________________________________________________________________________________426______________ 
 4xfk(A) : PGNIGNAGAIAEGHIVSTPFNPEANGEASMAFAEDYKKVTGHYPSYVEPAAVFGLQLFGEALKNVKPGEGKINTTDIALAIENASVKTPMGDYSMRSDDHQAKFPMVVQEVSKKARIKAD 
         :                                                                                                                          
 7jfn(A) : PGNIGNAGAIAEGHIVSTPFNPEANGEASMAFAEDYKKVTGHYPSYVEPAAVFGLQLFGEALKNVKPGEGKINTTDIALAIENASVKTPMGDYSMRSDDHQAKFPMVVQEVSKKARIKAD 
           ___326__________339____________________________________________________________________________________426______________ 

           _____448_____456_______________                                                                                          
 4xfk(A) : GTEYGFLPFKTFTGDESIDPVQESCSMKRPG                                                                                          
         :                                                                                                                          
 7jfn(A) : GTEYGFLPFKTFTGDESIDPVQESCSMKRP*                                                                                          
           _____448_____456_______________                                                                                          

Morph
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		12.0
Translation
(A) 		0.2
Closure
(%) 		99.1
Bending Residues
( green ) 		  211 - 212
  316 - 322
  326 - 335
  339 - 340
  426 - 429
  448 - 449
  456 - 457
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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