Transporter, Sodium/bile Acid Symporter Family

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Transporter, Sodium/bile Acid Symporter Family
  Conformer 1
(PDB) 		4n7w (A)
  Conformer 2
(PDB) 		4n7x (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 169 1.97   9 - 9   63 - 105   109 - 151   218 - 299
2 128 2.15   3 - 8   10 - 62   106 - 108   152 - 217

Sequence


           _______3_________________________________________________________62_____________________________________102___108_______ 
 4n7w(A) : *****MLVKITRLFPVWALLLSVAAYFRPTTFTGIGPYVGPLLMLIMFAMGVTLRLDDFKRVLSRPAPVAAATFLHYLIMPLTAWILAMLFRMPPDLSAGMVLVGSVASGTASNVMIYLA 
         :                                                                                                                          
 4n7x(A) : RAHHHMLVKITRLFPVWALLLSVAAYFRPTTFTGIGPYVGPLLMLIMFAMGVTLRLDDFKRVLSRPAPVAAATFLHYLIMPLTAWILAMLFRMPPDLSAGMVLVGSVASGTASNVMIYLA 
           _______3_________________________________________________________62_____________________________________102___108_______ 

           ___________________________145_____________________________________________________________________217__________________ 
 4n7w(A) : KGDVALSVTISAVSTLVGVFATPLLTRLYVDATISVDVVGMLKSILQIVVIPITAGLVIHHTFTKTVKRIEPYLPAMSMVCILAIISAVVAGSQSHIASVGFVVIIAVILHNGIGLLSGY 
         :                                                                                                                          
 4n7x(A) : KGDVALSVTISAVSTLVGVFATPLLTRLYVDATISVDVVGMLKSILQIVVIPITAGLVIHHTFTKTVKRIEPYLPAMSMVCILAIISAVVAGSQSHIASVGFVVIIAVILHNGIGLLSGY 
           ___________________________145_____________________________________________________________________217__________________ 

           ________________________________________________________________________                                                 
 4n7w(A) : WGGKLFGFDESTCRTLAIEVGMQNSGLAATLGKIYFSPLAALPGALFSVWHNLSGSLLAGYWSGKPVKKDQE                                                 
         :                                                                                                                          
 4n7x(A) : WGGKLFGFDESTCRTLAIAVGMQNSGLAATLGKIYFSPLAALPGALFSVWHNLSGSLLAGYWSGKP******                                                 
           ________________________________________________________________________                                                 

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		20.3
Translation
(A) 		1.0
Closure
(%) 		88.8
Bending Residues
( green ) 		  3 - 10
  62 - 63
  102 - 106
  108 - 109
  145 - 152
  217 - 218
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

Chart image not calculated - the graph is too big to count connection types.

PyMOL Script

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