Transposase For Transposon Tn4430

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Transposase For Transposon Tn4430
  Conformer 1
(PDB)
7qd8 (A)
  Conformer 2
(PDB)
7qd4 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 391 4.03   4 - 301   378 - 481
2 69 2.9   302 - 370
3 167 4.5   482 - 551   726 - 875
4 210 3.33   552 - 716   876 - 964

Sequence


           ________________________________________________________________________________________________________________________ 
 7qd8(A) : GVKQLLSEAQRNELMDLSRLTEWDLVTFHTFSKHDLHLILKHRRGYNRLGFALQLVLIRYPGWSLTEYKDIPQYVVAYVASQLQIPPEEFLVYAKRGNTLWEHLGEIRTEYGYQNFSSEY 
         :                                                                                                                          
 7qd4(A) : GVKQLLSEAQRNELMDLSRLTEWDLVTFHTFSKHDLHLILKHRRGYNRLGFALQLVLIRYPGWSLTEYKDIPQYVVAYVASQLQIPPEEFLVYAKRGNTLWEHLGEIRTEYGYQNFSSEY 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 7qd8(A) : KETLLQFLVQQAMDNNNTLYLIEITISTLRKMKVILPAMYVIEDIVWEAKQQADQKVYSILHDGLVQEQKDQLDALLLPTINGKSPLAWLKDVPAQPSPESFLKVIDRLQFVQKIGLTID 
         :                                                                                                                          
 7qd4(A) : KETLLQFLVQQAMDNNNTLYLIEITISTLRKMKVILPAMYVIEDIVWEAKQQADQKVYSILHDGLVQEQKDQLDALLLPTINGKSPLAWLKDVPAQPSPESFLKVIDRLQFVQKIGLTID 
           ________________________________________________________________________________________________________________________ 

           _________________________________________________________301____________________________________________________________ 
 7qd8(A) : TTKINTNRLRQLARLGSKYEPYAFRRFNEVKRYSMLVSFLLEITQDLIDYAIEIHDRLMMNLQTKGKKEQDEIQQANGKKLNEKILQFITVCGTLIEAKETGKDAFAALDEVMSWNEMVE 
         :                                                                                                                          
 7qd4(A) : TTKINTNRLRQLARLGSKYEPYAFRRFNEVKRYSMLVSFLLEITQDLIDYAIEIHDRLMMNLQTKGKKEQDEIQQANGKKLNEKILQFITVCGTLIEAKETGKDAFAALDEVMSWNEMVE 
           _________________________________________________________301____________________________________________________________ 

           _____369_____________________________________________________________________________________________________________481 
 7qd8(A) : SVEEAKQLS-----dYLDLLNTRYSYVRRYAPTLLRSLHFRATKSGEPVLQALDTIHELNETGKRKVPHGAPLHFVSNR-----------iNRHYYELAALTELRNHIRSGDIFVSGSRH 
         :                                                                                                                          
 7qd4(A) : SVEEAKQLSRPLNYDYLDLLNTRYSYVRRYAPTLLRSLHFRATKSGEPVLQALDTIHELNETGKRKVPHGAPLHFVSNRWQKHVYDDDGNINRHYYELAALTELRNHIRSGDIFVSGSRH 
           _____369_____________________________________________________________________________________________________________481 

           ___________________________________________________551__________________________________________________________________ 
 7qd8(A) : HKAFDDYLIPYDEWNEVSNIPNGLTAPLKAEDYITDRINRLNEHLEWLShVERLDRGTPEEAKAFSKLLHSMLPRIKLTDLLIEVASWTGFHDQFIHASTNQSPDQEEQNIVLATLMAMG 
         :                                                                                                                          
 7qd4(A) : HKAFDDYLIPYDEWNEVSNIPNGLTAPLKAEDYITDRINRLNEHLEWLS---rLDRGTPEEAKAFSKLLHSMLPRIKLTDLLIEVASWTGFHDQFIHASTNQSPDQEEQNIVLATLMAMG 
           ___________________________________________________551__________________________________________________________________ 

           _________________________________________________669____________________________________________________________________ 
 7qd8(A) : TNIGLTKMAEATPGISYRQMANASQWRMYDDAMVRAQSILVNFQKEQKLSSYWsA------------YHVKVITTNARDALHVLDGLLHHETDLKIEEHYTDTAGYTDQVFALTHLLGFR 
         :                                                                                                                          
 7qd4(A) : TNIGLTKMAEATPGISYRQMANASQWRMYDDAMVRAQSILVNFQKEQKLSSYWGsDGMRLSgGTIYRFhVKVIT--aRDALHVLDGLLH-------eEHYT---gYTDQVFALTHLLGFR 
           _________________________________________________669____________________________________________________________________ 

           _____________________________________________________________________________________________875________________________ 
 7qd8(A) : FAP--------------lLKGKINVKLIKENYEDIRRLAYSVQTGKVSSALIMGKLGSYARQNKLATALGEMGRIEKTLFTLDYISNKAVRRRVQKGLNKGEAINALARIIFFGQRGEFR 
         :                                                                                                                          
 7qd4(A) : FAPRIRDLADTKLFSqALLKGKINVKLIKENYEDIRRLAYSVQTGKVSSALIMGKLGSYARQNKLATALGEMGRIEKTLFTLDYISNKAVRRRVQKGLNKGEAINALARIIFFGQRGEFR 
           _____________________________________________________________________________________________875________________________ 

           ___________________________________________________________________________________                                      
 7qd8(A) : ERALQDQLQRASALNIIINAISVWNTVYMEKAVEELKARGEFREDLMPYAWPLGWEHINFLGEYKFE****************                                      
         :                                                                                                                          
 7qd4(A) : ERALQDQLQRARALNIIINAISVWNTVYMEKAVEELKARGEFREDLMPYAWPLGWEHINFLGEYKFEGLHDTGQMNLRPLRIK                                      
           ___________________________________________________________________________________                                      

Morph

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Domain Pairs

Fixed Domain Moving Domain Rotation Angle Translation   (A) Closure Bending Residues  
1 2 45.9 3.3 99.6   301 - 302   369 - 380 Bending Region Analysis
1 3 32.9 -1.0 82.3   481 - 482 Bending Region Analysis
3 4 35.6 2.5 55.0   551 - 552   669 - 727   875 - 876 Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Hinge

Conformer 1 Contact:
Residue 3 ———› Residue 4

Conformer 2 Contact:
Residue 4 ———› Residue 3

Movement classification: Hinge

PyMOL Script

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