Extracellular Solute-Binding Protein Family 1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Extracellular Solute-Binding Protein Family 1
  Conformer 1
(PDB) 		5gx6 (A)
  Conformer 2
(PDB) 		5gx8 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 248 0.53   153 - 322   418 - 436   440 - 498
2 221 0.66   30 - 152   323 - 417   437 - 439

Sequence


           _______________________________________________________________________________________________________________________1 
 5gx6(A) : PKETTIFAMHLGKALDPNLPVFVKAEKDTNIKLVNVASQNQTDQIQAYNLMLTEGKLPDIVSYELSADLENLGIEGGLIPLEDLINQHAPNLKKFFEENPRYKKDAVAVDGHIYMIPNYY 
         :                                                                                                                          
 5gx8(A) : *KETTIFAMHLGKALDPNLPVFVKAEKDTNIKLVNVASQNQTDQIQAYNLMLTEGKLPDIVSYELSADLENLGIEGGLIPLEDLINQHAPNLKKFFEENPRYKKDAVAVDGHIYMIPNYY 
           _______________________________________________________________________________________________________________________1 

           48______________________________________________________________________________________________________________________ 
 5gx6(A) : DYFNIKVSQGYFIRQDWLEKLGLKEPRTVDELYTTLKAFREKDPNGNGKKDEVPFFVRANNVRKVLTSLVDLFKASPIWYEENGMVKYGPAQKEFKHAIKELSKWYKEGLIDEEIFTRGL 
         :                                                                                                                          
 5gx8(A) : DYFNIKVSQGYFIRQDWLEKLGLKEPRTVDELYTTLKAFREKDPNGNGKKDEVPFFVRANNVRKVLTSLVDLFKASPIWYEENGMVKYGPAQKEFKHAIKELSKWYKEGLIDEEIFTRGL 
           48______________________________________________________________________________________________________________________ 

           _____________________________________________________322________________________________________________________________ 
 5gx6(A) : ESRDYLLSNNLGGATDDWIASTSSYNRNLADKIPGFNLKLVLPYELNGNAKTRHARTTYLGGWGISKDAKDPVSLIKYFDYWYSVEGRRLWNFGIEGSEYTLVDGKPVFTDKVLKNPDGK 
         :                                                                                                                          
 5gx8(A) : ESRDYLLSNNLGGATDDWIASTSSYNRNLADKIPGFNLKLVLPYELNGNAKTRHARTTYLGGWGISKDAKDPVSLIKYFDYWYSVEGRRLWNFGIEGSEYTLVDGKPVFTDKVLKNPDGK 
           _____________________________________________________322________________________________________________________________ 

           _________________________414______________431_____________________________________________________________________       
 5gx6(A) : TPLAVLREVGAQYRLGAFQDAQYELGWASESAKAGYKYYMDNDVVLDELPILKYTKEKSKEFVSIDTAMRAVVEEKAQQWILGSGDIDKEWDAYIKRLENLGLSKAEQIQNEAF       
         :                                                                                                                          
 5gx8(A) : TPLAVLREVGAQYRLGAFQDAQYELGWASESAKAGYKYYMDNDVVLDELPILKYTKEKSKEFVSIDTAMRAVVEEKAQQWILGSGDIDKEWDAYIKRLENLGLSKAEQIQNEAF       
           _________________________414______________431_____________________________________________________________________       

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		47.0
Translation
(A) 		0.7
Closure
(%) 		99.1
Bending Residues
( green ) 		  148 - 154
  322 - 323
  414 - 423
  431 - 447
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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