Glutamate Receptor Ionotropic, Delta-1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glutamate Receptor Ionotropic, Delta-1
  Conformer 1
(PDB) 		7z2r (A)
  Conformer 2
(PDB) 		5cc2 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 147 1.48   5 - 107   213 - 256
2 105 1.34   108 - 212

Sequence


           ________________________________________________________________________________________________________107_____________ 
 7z2r(A) : GGLTLKVVTVLEEPFVMVAENILGQPKRYKGFSIDVLDALAKALGFKYEIYQAPDGRYGHQLHNTSWNGMIGELISKRADLAISAITITPERESVVDFSKRYMDYSVGILIKKGTPVRTF 
         :                                                                                                                          
 5cc2(A) : **VVLRVVTVLEEPFVMVSENVLGKPKKYQGFSIDVLDALSNYLGFNYEIYVAPDHKYGSPQEDGTWNGLVGELVFKRADIGISALTITPDRENVVDFTTRYMDYSVGVLLRRGTSIQSL 
           ________________________________________________________________________________________________________107_____________ 

           _________________________________________________________________________________________212____________________________ 
 7z2r(A) : QDLSKQLEMSYGTVRDSAVYEYFRAKGTNPLEQDSTFAELWRTISKNGGADNCVSNPSEGIRKAKKGNYAFLWDVAVVEYAALTDDDCSVTVIGNSISSKGYGIALQHGSPYRDLFSQRI 
         :                                                                                                                          
 5cc2(A) : QDLSKQTDIPYGTVLDSAVYQHVRMKGLNPFERDSMYSQMWRMINRSNGSENNVLESQAGIQKVKYGNYAFVWDAAVLEYVAINDPDCSFYTVGNTVADRGYGIALQHGSPYRDVFSQRI 
           _________________________________________________________________________________________212____________________________ 

           __________________                                                                                                       
 7z2r(A) : LELQDTGDLDVLKQKWWP                                                                                                       
         :                                                                                                                          
 5cc2(A) : LELQQSGDMDILKHKWWP                                                                                                       
           __________________                                                                                                       

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		15.9
Translation
(A) 		-0.9
Closure
(%) 		90.5
Bending Residues
( green ) 		  107 - 108
  212 - 213
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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