Importin Subunit Beta-3

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Importin Subunit Beta-3
  Conformer 1
(PDB)
3w3t (A)
  Conformer 2
(PDB)
3w3z (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 493 1.31   522 - 527   529 - 1086
2 484 1.19   6 - 521   528 - 528

Sequence


           ________________________________________________________________________________________________________________________ 
 3w3t(A) : LPEEVNRTLLQIVQAFAS-dNQIRSVAEKALSEEWeNNIEYLLTFLAEQAAFSQDTTVAALSAVLFRKLALKAPITHIRKEVLAQIRSSLLKGFLSERADSIRHKLSDAIAECVQDDLPA 
         :                                                                                                                          
 3w3z(A) : LPEEVNRTLLQIVQAFASPDNQIRSVAEKALSEEWeNNIEYLLTFLAEQAAFSQDTTVAALSAVLFRKLALK--iTHIRKEVLAQIRSSLLKGFLSERADSIRHKLSDAIAECVQDDLPA 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 3w3t(A) : WPELLQALIESLKSGNPNFRESSFRILTTVPYLITAVDINSILPIFQSGFTDASDNVKIAAVTAFVGYFKQLPKSEWSKLGILLPSLLNSLPRFLDDGKDDALASVFESLIELVELAPKL 
         :                                                                                                                          
 3w3z(A) : WPELLQALIESLKSGNPNFRESSFRILTTVPYLIT-------lPIFQSGFTDASDNVKIAAVTAFVGYFKQLPKSEWSKLGILLPSLLNSLPRFLDDGKDDALASVFESLIELVELAPKL 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 3w3t(A) : FKDMFDQIIQFTDMVIKNKDLEPPARTTALELLTVFSENAPQMCKSNQNYGQTLVMVTLIMMTEVSIDDDDAAEWIESDDTDDEEEVTYDHARQALDRVALKLGGEYLAAPLFQYLQQMI 
         :                                                                                                                          
 3w3z(A) : FKD-fDQIIQFTD-vIKNKDLEPPARTTALELLTVFSENAPQ-cKSNQNYGQTLV-vTLI--tEVSIDDDDAAEWIESDDTDDEEEVTYDHARQALDRVALKLGGEYLAAPLFQYLQQ-i 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 3w3t(A) : TSTEWRERFAAMMALSSAAEGCADVLIGEIPKILDMVIPLINDPHPRVQYGCCNVLGQISTDFSPFIQRTAHDRILPALISKLTSECTSRVQTHAAAALVNFSEFASKDILEPYLDSLLT 
         :                                                                                                                          
 3w3z(A) : TSTEWRERFAA--aLSSAAEGCADVLIGEIPKILD-vIPLINDPHPRVQYGCCNVLGQISTDFSPFIQRTAHDRILPALISKLTSECTSRVQTHAAAALVNFSEFASKDILEPYLDSLLT 
           ________________________________________________________________________________________________________________________ 

           ______________513_______________________________________________________________________________________________________ 
 3w3t(A) : NLLVLLQSNKLYVQEQALTTIAFIAEAAKNKFIKYYDTLMPLLLNVLKVnSVLKGKCMECATLIGFAVGKEKFHEHSQELISILVALQNSDdDALRSYLEQSWSRICRILGDDFVPLLPI 
         :                                                                                                                          
 3w3z(A) : NLLVLLQSNKLYVQEQALTTIAFIAEAAKNKFIKYYDTL-pLLLNVLK-nSVLKGKC-eCATLIGFAVGKEKFHEHSQELISILVALQNSDd-ALRSYLEQSWSRICRILGDDFVPLLPI 
           ______________513_______________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 3w3t(A) : VIPPLLITAKATQDVGLIEEEEAANFQQYPDWDVVQVQGKHIAIHTSVLDDKVSAMELLQSYATLLRGQFAVYVKEVMEEIALPSLDFYLHDGVRAAGATLIPILLSCLLAATeELVLLW 
         :                                                                                                                          
 3w3z(A) : VIPPLLITAKATQDVGLIEEEEAANFQQYPDWDVVQVQGKHIAIHTSVLDDKVSA-eLLQSYATLLRGQFAVYVKEV-eEIALPSLDFYLHDGVRAAGATLIPILLSCLLAATeELVLLW 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 3w3t(A) : HKASSKLIGGLMSEPMPEITQVYHNSLVNGIKVMGDNCLSEDQLAAFTKGVSANLTDTYERMQDRdEYNEfTDEDLLDEINKSIAAVLKTTNGHYLKNLENIWPMINTFLLDNEPILVIF 
         :                                                                                                                          
 3w3z(A) : HKASSKLIGGL-sEP-pEITQVYHNSLVNGIKV-gDNCLSEDQLAAFTKGVSANLTDTYER-qDR-----fTDEDLLDEINKSIAAVLKTTNGHYLKNLENIWP-iNTFLL---pILVIF 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 3w3t(A) : ALVVIGDLIQYeQTASMKNAFIPKVTECLISPDARIRQAASYIIGVCAQYAPSTYADVCIPTLDTLVQIVDgSKLEENRSSTENASAAIAKILYAY-----dTYTANWFKTLPTITDKEA 
         :                                                                                                                          
 3w3z(A) : ALVVIGDLIQYeQTAS-kNAFIPKVTECLISPDARIRQAASYIIGVCAQYAPSTYADVCIPTLDTLVQIVDgSKLEENRSSTENASAAIAKILYAYNSNIPdTYTANWFKTLPTITDKEA 
           ________________________________________________________________________________________________________________________ 

           ___________________________________________________________________________                                              
 3w3t(A) : ASFNYQFLSQLIENsNISAVVDSVIQALNERSLt----VISSVKKLLGFLPSSDAMAIFNRYPADIMEKVHKWFA                                              
         :                                                                                                                          
 3w3z(A) : ASFNYQFLSQLI--sNISAVVDSVIQALNERSLTEREtVISSVKKLLGFLPSSDA-aIFNRYPADI-eKVHKWF*                                              
           ___________________________________________________________________________                                              

Morph

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This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
37.0
Translation
(A)
-0.5
Closure
(%)
90.5
Bending Residues
( green )
  513 - 529
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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