Replication Factor C Subunit 4

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Replication Factor C Subunit 4
  Conformer 1
(PDB) 		7thj (B)
  Conformer 2
(PDB) 		7tic (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 165 0.2   13 - 164   181 - 185   198 - 205
2 145 0.23   10 - 12   165 - 180   186 - 197   206 - 319

Sequence


           __11____________________________________________________________________________________________________________________ 
 7thj(B) : QLPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQAL 
         :                                                                                                                          
 7tic(B) : QLPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQAL 
           __11____________________________________________________________________________________________________________________ 

           __________________________________164_____________180_184__________197_____205__________________________________________ 
 7thj(B) : RRTMELYSNSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVAGHGLVNADNVFKIVDSPHPLIVKKMLLASNLED 
         :                                                                                                                          
 7tic(B) : RRTMELYSNSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVAGHGLVNADNVFKIVDSPHPLIVKKMLLASNLED 
           __________________________________164_____________180_184__________197_____205__________________________________________ 

           ___________________________________________________________________________                                              
 7thj(B) : SIQILRTDLWKKGYSSIDIVTTSFRVTKNLAQVKESVRLEMIKEIGLTHMRILEGVGTYLQLASMLAKIHKLNNK                                              
         :                                                                                                                          
 7tic(B) : SIQILRTDLWKKGYSSIDIVTTSFRVTKNLAQVKESVRLEMIKEIGLTHMRILEGVGTYLQLASMLAKIHKLNN*                                              
           ___________________________________________________________________________                                              

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		2.4
Translation
(A) 		0.0
Closure
(%) 		100.0
Bending Residues
( green ) 		  11 - 13
  164 - 165
  180 - 181
  184 - 186
  197 - 198
  205 - 206
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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