Replication Factor C Subunit 4

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Replication Factor C Subunit 4
  Conformer 1
(PDB) 		7thj (B)
  Conformer 2
(PDB) 		7tid (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 223 1.05   10 - 232
2 88 0.59   233 - 320

Sequence


           ________________________________________________________________________________________________________________________ 
 7thj(B) : ****QLPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGA 
         :                                                                                                                          
 7tid(B) : TLSLQLPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGA 
           ________________________________________________________________________________________________________________________ 

           _____________________________________________________________________________________________________227________________ 
 7thj(B) : QQALRRTMELYSNSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVAGHGLVNADNVFKIVDSPHPLIVKKMLLAS 
         :                                                                                                                          
 7tid(B) : QQALRRTMELYSNSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVAGHGLVNADNVFKIVDSPHPLIVKKMLLAS 
           _____________________________________________________________________________________________________227________________ 

           _______________________________________________________________________________                                          
 7thj(B) : NLEDSIQILRTDLWKKGYSSIDIVTTSFRVTKNLAQVKESVRLEMIKEIGLTHMRILEGVGTYLQLASMLAKIHKLNNK                                          
         :                                                                                                                          
 7tid(B) : NLEDSIQILRTDLWKKGYSSIDIVTTSFRVTKNLAQVKESVRLEMIKEIGLTHMRILEGVGTYLQLASMLAKIHKLNNK                                          
           _______________________________________________________________________________                                          

Morph

Jmol._Canvas2D (Jmol) "jmolApplet"[x]

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		31.2
Translation
(A) 		2.3
Closure
(%) 		31.8
Bending Residues
( green ) 		  227 - 233
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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