DynDom - Protein Domain Motions

Replication Factor C Subunit 1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	Replication Factor C Subunit 1
Conformer 1 (PDB)	7thj (A)
Conformer 2 (PDB)	7tic (A)
Window Length	7
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	230	0.33	297 - 501 508 - 514 522 - 543 666 - 666 678 - 685 702 - 703
2	146	0.33	502 - 507 515 - 521 544 - 665 667 - 677
3	89	0.35	686 - 701 704 - 776

Sequence

`________________________________________________________________________________________________________________________` `7thj(A) : REEDKLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEA` `:` `7tic(A) : REEDKLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEA` `________________________________________________________________________________________________________________________` `_______________________________________________________________________________________501___507____514____521__________` `7thj(A) : QNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRGDIRQVINLLSTISTTTKnE` `:` `7tic(A) : QNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRGDIRQVINLLSTI-------` `_______________________________________________________________________________________501___507____514____521__________` `__543___________________________________________________________________________________________________________________` `7thj(A) :` `ISKAWEKNIALKPFDIAHKMLDGQIYSDIGSRNFTLNDKIALYFDDFDFTPLMIQENYLSTRPSVLKPGQSHLEAVAEAANCISLGDIVEKKIRSSEQLWSLLPLHAVLSSVYPASKVAG` `:` `7tic(A) :` `-sKAWEKNIALKPFDIAHKMLDGQIYSDIGSRNFTLNDKIALYFDDFDFTPLMIQENYLSTRPSVLKPGQSHLEAVAEAANCISLGDIVEKKIRSSEQLWSLLPLHAVLSSVYPASKVAG` `__543___________________________________________________________________________________________________________________` `____665_________677_____685_____________701_____________________________________________________________________________` `7thj(A) : HMAGRINFTAWLGQNSKSAKYYRLLQEIHYHTRLGTSTDKIGLRLDYLPTFRKRLLDPFLKQGADAISSVIEVMDDYYLTKEDWDSIMEFFVGPDVTTAIIKKIPATVKSGFTRKYNSMT` `:` `7tic(A) : HMAGRINFTAWLGQNSKSAKYYRLLQEIHYHTRLGTSTDKIGLRLDYLPTFRKRLLDPFLKQGADAISSVIEVMDDYYLTKEDWDSIMEFFVGPDVTTAIIKKIPATVKSGFTRKYNSMT` `____665_________677_____685_____________701_____________________________________________________________________________` `_____` `7thj(A) : HP***` `:` `7tic(A) : HPVAI` `_____`

Morph

Jmol._Canvas2D (Jmol) "jmolApplet"[x]

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( red )	2
Rotation Angle (deg)	2.4
Translation (A)	0.2
Closure (%)	97.6
Bending Residues ( green )	501 - 502 507 - 508 514 - 515 521 - 522 543 - 546 665 - 667 677 - 678
Bending Region Analysis

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( yellow )	3
Rotation Angle (deg)	3.4
Translation (A)	0.6
Closure (%)	46.5
Bending Residues ( green )	685 - 686 701 - 704
Bending Region Analysis