Replication Factor C Subunit 1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Replication Factor C Subunit 1
  Conformer 1
(PDB)
7tic (A)
  Conformer 2
(PDB)
7tku (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 238 3.61   294 - 546   548 - 548   550 - 551
2 228 1.19   547 - 547   549 - 549   552 - 777

Sequence


           ________________________________________________________________________________________________________________________ 
 7tic(A) : *REEDKLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEE 
         :                                                                                                                          
 7tku(A) : VREEDKLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEE 
           ________________________________________________________________________________________________________________________ 

           _____________________________________________________________________________________________________________522________ 
 7tic(A) : AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRGDIRQVINLLSTIs----- 
         :                                                                                                                          
 7tku(A) : AQNLNGKHFVIIMDEVDGMSG---gGVGQLAQFCRKTSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRGDIRQVINLLSTISTTTKT 
           _____________________________________________________________________________________________________________522________ 

           ________________________________________________________________________________________________________________________ 
 7tic(A) : ----------KAWEKNIALKPFDIAHKMLDGQIYSDIGSRNFTLNDKIALYFDDFDFTPLMIQENYLSTRPSVLKPGQSHLEAVAEAANCISLGDIVEKKIRSSEQLWSLLPLHAVLSSV 
         :                                                                                                                          
 7tku(A) : INHENINEISKAWEKNIALKPFDIAHKMLDGQIYSDIGSRNFTLNDKIALYFDDFDFTPLMIQENYLSTRPSVLKPGQSHLEAVAEAANCISLGDIVEKKIRSSEQLWSLLPLHAVLSSV 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 7tic(A) : YPASKVAGHMAGRINFTAWLGQNSKSAKYYRLLQEIHYHTRLGTSTDKIGLRLDYLPTFRKRLLDPFLKQGADAISSVIEVMDDYYLTKEDWDSIMEFFVGPDVTTAIIKKIPATVKSGF 
         :                                                                                                                          
 7tku(A) : YPASKVAGHMAGRINFTAWLGQNSKSAKYYRLLQEIHYHTRLGTSTDKIGLRLDYLPTFRKRLLDPFLKQGADAISSVIEVMDDYYLTKEDWDSIMEFFVGPDVTTAIIKKIPATVKSGF 
           ________________________________________________________________________________________________________________________ 

           _____________                                                                                                            
 7tic(A) : TRKYNSMTHPVAI                                                                                                            
         :                                                                                                                          
 7tku(A) : TRKYNSMTH****                                                                                                            
           _____________                                                                                                            

Morph

Jmol._Canvas2D (Jmol) "jmolApplet"[x]

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
38.1
Translation
(A)
2.7
Closure
(%)
10.5
Bending Residues
( green )
  522 - 552
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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