Adenosine Receptor A2a,soluble Cytochrome B562

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Adenosine Receptor A2a,soluble Cytochrome B562
  Conformer 1
(PDB) 		8gne (A)
  Conformer 2
(PDB) 		5uig (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 247 0.96   6 - 194   231 - 298
2 116 1.59   195 - 230

Sequence


           ________________________________________________________________________________________________________________________ 
 8gne(A) : GAPPIMGSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITISTGFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTG 
         :                                                                                                                          
 5uig(A) : *****MGSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITISTGFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTG 
           ________________________________________________________________________________________________________________________ 

           _______________________________________________________________________192______________________________________________ 
 8gne(A) : TRAKGIIAICWVLSFAIGLTPMLGWNNCGQPKEGKQHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLADLEDNWETLNDNLKVIEKA-nAAQVKDAL 
         :                                                                                                                          
 5uig(A) : TRAKGIIAICWVLSFAIGLTPMLGWNNCGQ----------cGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLADLEDNWETLNDNLKVIEKADNAAQVKDAL 
           _______________________________________________________________________192______________________________________________ 

           _____________________________________________________________________221________________________________________________ 
 8gne(A) : TKMRAAALDAQK--------mKDFRHGFDILVGQIDDALKLANEGKVKEAQAAAEQLKTTRNAYIQKYLERARSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWL 
         :                                                                                                                          
 5uig(A) : TKMRAAALDAQKATPPKLpEMKDFRHGFDILVGQIDDALKLANEGKVKEAQAAAEQLKTTRNAYIQKYLERARSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWL 
           _____________________________________________________________________221________________________________________________ 

           __________________________________________                                                                               
 8gne(A) : MYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVLR**                                                                               
         :                                                                                                                          
 5uig(A) : MYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVLRQQ                                                                               
           __________________________________________                                                                               

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		62.6
Translation
(A) 		1.3
Closure
(%) 		15.3
Bending Residues
( green ) 		  192 - 198
  221 - 236
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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