Alpha-Trehalose-Phosphate Synthase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Alpha-Trehalose-Phosphate Synthase
  Conformer 1
(PDB) 		1gz5 (A)
  Conformer 2
(PDB) 		1uqt (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 415 0.55   3 - 12   38 - 54   63 - 454
2 29 1.43   13 - 37   55 - 62

Sequence


           ______7____________________________37_______________54______62__________________________________________________________ 
 1gz5(A) : SRLVVVSNRIAPPDEHAASAGGLAVGILGALKAAGGLWFGWSGETGNEDQPLKKVKKGNITWASFNLSEQDLDEYYNQFSNAVLWPAFHYRLDLVQFQRPAWDGYLRVNALLADKLLPLL 
         :                                                                                                                          
 1uqt(A) : SRLVVVSNRIAPPD----sAGGLAVGILGALKAAGGLWFGWSGETGNEDQPLKKVKKGNITWASFNLSEQDLDEYYNQFSNAVLWPAFHYRLDLVQFQRPAWDGYLRVNALLADKLLPLL 
           ______7____________________________37_______________54______62__________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1gz5(A) : QDDDIIWIHDYHLLPFAHELRKRGVNNRIGFFLHIPFPTPEIFNALPTYDTLLEQLCDYDLLGFQTENDRLAFLDCLSNLTRVTTRSAKSHTAWGKAFRTEVYPIGIEPKEIAKQAAGPL 
         :                                                                                                                          
 1uqt(A) : QDDDIIWIHDYHLLPFAHELRKRGVNNRIGFFLHIPFPTPEIFNALPTYDTLLEQLCDYDLLGFQTENDRLAFLDCLSNLTRVTTRSAKSHTAWGKAFRTEVYPIGIEPKEIAKQAAGPL 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1gz5(A) : PPKLAQLKAELKNVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTSRGDVQAYQDIRHQLENEAGRINGKYGQLGWTPLYYLNQHFDRKLL-kIFRYSDVGLVTPLR 
         :                                                                                                                          
 1uqt(A) : PPKLAQLKAELKNVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTSRGDVQAYQDIRHQLENEAGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFRYSDVGLVTPLR 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________                         
 1gz5(A) : DG-nLVAKEYVAAQDPANPGVLVLSQFAGAANELTSALIVNPYDRDEVAAALDRALT-sLAERISRHAE-lDVIVKNDINHWQECFISDLKQIVPR                         
         :                                                                                                                          
 1uqt(A) : DGMNLVAKEYVAAQDPANPGVLVLSQFAGAANELTSALIVNPYDRDEVAAALDRALTMSLAERISRHAEMLDVIVKNDINHWQECFISDLKQIVPR                         
           ________________________________________________________________________________________________                         

Morph

Jmol._Canvas2D (Jmol) "jmolApplet"[x]

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		22.2
Translation
(A) 		0.9
Closure
(%) 		62.4
Bending Residues
( green ) 		  7 - 13
  37 - 38
  54 - 55
  62 - 63
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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