Atp Phosphoribosyltransferase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Atp Phosphoribosyltransferase
  Conformer 1
(PDB) 		8juk (A)
  Conformer 2
(PDB) 		6fcc (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 122 0.81   20 - 112   196 - 224
2 83 0.67   113 - 195

Sequence


           _____________________________________________________________________________________________________________112________ 
 8juk(A) : MNDVRNDDPNFNVMGNFDHGLTLALSKGRILKETLPLLATAGINLLEDPEKSRKLIFPTTHKQVRILILRASDVPTYVENGAADLGVAGKDVLMEHGAQHVYELLDLQIAKCKLMTAGKV 
         :                                                                                                                          
 6fcc(A) : *****************FLGLTLALSKGRILEETMPLLRAAGVELLEDPEASRKLIFPTSNPNVRVLILRASDVPTYVEHGAADFGVAGKDVLLEHGANHVYELLDLKIAQCKLMTAGVK 
           _____________________________________________________________________________________________________________115________ 

           ________________________________________________________________________195________________________________              
 8juk(A) : GMERPKGRLKIATKYVNLTRQYYASLGEQVDVIKLYGSMELAPLVGLGDYIVDVVDTGNTLRANGLEPLEEICKVSSRLIVNKASFKRKQVLLNPIISQLEQAVQSR              
         :                                                                                                                          
 6fcc(A) : DAPLPNRRLRIATKYVNVARAYFASQGQQVDVIKLYGSMELAPLVGLGDLIVDVVDTGNTLRANGLEARDHICDVSSRLIVNQVSYKRKFALLEPILDSFKNSINS*              
           ________________________________________________________________________198________________________________              

Morph

Jmol._Canvas2D (Jmol) "jmolApplet"[x]

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		10.0
Translation
(A) 		-0.8
Closure
(%) 		85.8
Bending Residues
( green ) 		  112 - 113
  195 - 196
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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