3C-Like Proteinase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name 3C-Like Proteinase
  Conformer 1
(PDB) 		7cam (A)
  Conformer 2
(PDB) 		8wsk (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 205 0.69   6 - 198   222 - 225   230 - 231   234 - 238   263 - 266
2 82 0.62   199 - 221   226 - 229   232 - 233   239 - 262   267 - 295

Sequence


           ________________________________________________________________________________________________________________________ 
 7cam(A) : *RKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSP 
         :                                                                                                                          
 8wsk(A) : FRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSP 
           ________________________________________________________________________________________________________________________ 

           _________________________________________________________________________198___________________220______229______238____ 
 7cam(A) : SGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPL 
         :                                                                                                                          
 8wsk(A) : SGVYQCAMRPNFTIKGS---gSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPL 
           _________________________________________________________________________198___________________220______229______238____ 

           _________________262_266__________________________________                                                               
 7cam(A) : TQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQC                                                               
         :                                                                                                                          
 8wsk(A) : TQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVR**                                                               
           _________________262_266__________________________________                                                               

Morph

Jmol._Canvas2D (Jmol) "jmolApplet"[x]

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		7.0
Translation
(A) 		0.2
Closure
(%) 		6.3
Bending Residues
( green ) 		  198 - 199
  220 - 226
  229 - 235
  238 - 239
  262 - 263
  266 - 267
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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