Gtp-Binding Protein Typa/bipa

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Gtp-Binding Protein Typa/bipa
  Conformer 1
(PDB) 		4zci (A)
  Conformer 2
(PDB) 		8ewh (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 187 1.24   81 - 81   300 - 385   484 - 599
2 271 1.02   4 - 80   82 - 299
3 95 0.59   386 - 480

Sequence


           _________________________________________________________________79_____________________________________________________ 
 4zci(A) : MIEKLRNIAIIAHVDHGKTTLVDKLLQQSGT------------iLAKNTAIKWNDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDR 
         :                                                                                                                          
 8ewh(A) : *IENLRNIAIIAHVDHGKTTLVDKLLQQSGTFDARAETQERiTILAKNTAIKWNDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAHGLKPIVVINKVDR 
           _________________________________________________________________79_____________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 4zci(A) : PGARPDWVVDQVFDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPDVDLDGPFQMQISQLDYNSYVGVIGIGRIKRGKVKPNQQVTIIDSEGKTRNAKVG 
         :                                                                                                                          
 8ewh(A) : PGARPDWVVDQVFDLFVNLDATDEQLDFPIIYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPDVDLDGPLQMQISQLDYNNYVGVIGIGRIKRGKVKPNQQVTIIDSEGKTRNAKVG 
           ________________________________________________________________________________________________________________________ 

           ____________________________________________299_________________________________________________________________________ 
 4zci(A) : KVLGHLGLERIETDLAEAGDIVAITGLGELNISDTVCDTQNVEALPALSVDEPTVSMFFCVNTSPFCGKEGKFVTSRQILDRLNKELVHNVALRVEETEDADAFRVSGRGELHLSVLIEN 
         :                                                                                                                          
 8ewh(A) : KVLTHLGLERIDSNIAEAGDIIAITGLGELNISDTICDPQNVEALPALSVDEPTVSMFFCVNTSPFCGKEGKFVTSRQILDRLNKELVHNVALRVEETEDADAFRVSGRGELHLSVLIEN 
           ____________________________________________299_________________________________________________________________________ 

           __________385___________________________________________________________________________________________479_____________ 
 4zci(A) : MRREGFELAVSRPKVIFREIDGRKQEPYENVTLDVEEQHQGSVMQALGERKGDLKNMNPDGKGRVRLDYVIPSRGLIGFRSEFMTMTSGTGLLYSTFSHYDDVRPGEVGQRQNGVLISNG 
         :                                                                                                                          
 8ewh(A) : MRREGFELAVSRPKVIFREIDGRKQEPYENVTLDVEEQHQGSVMQALGERKGDLKNMNPDGKGRVRLDYVIPSRGLIGFRSEFMTMTSGTGLLYSTFSHYDDIRPGEVGQRQNGVLISNG 
           __________385___________________________________________________________________________________________479_____________ 

           ______________________________________________________________________________________________________                   
 4zci(A) : QGKAVAFALFGLQDRGKLFLGHGAEVYEGQIIGIHSRSNDLTVNCLT---------vLVPPIRMTLEQALEFIDDDELVEVTPTSIRIRKRHLTENDRRRAN                   
         :                                                                                                                          
 8ewh(A) : QGKAVAFALFGLQDRGKLFLGHGAEVYEGQIIGIHSRSNDLTVNCLTGKsGTDEAVILVPPIKMSLEQALEFIDDDELVEVTPTSIRIRKRHLTENDRRRAN                   
           ______________________________________________________________________________________________________                   

Morph

Jmol._Canvas2D (Jmol) "jmolApplet"[x]

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		31.7
Translation
(A) 		-1.3
Closure
(%) 		69.2
Bending Residues
( green ) 		  79 - 83
  299 - 304
Bending Region Analysis
Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( yellow ) 		3
Rotation Angle
(deg) 		17.8
Translation
(A) 		0.7
Closure
(%) 		59.9
Bending Residues
( green ) 		  385 - 386
  479 - 484
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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