Sensory Transduction Regulatory Protein, Anti-Anti-Sigma Factor Phyr

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Sensory Transduction Regulatory Protein, Anti-Anti-Sigma Factor Phyr
  Conformer 1
(PDB) 		5uxw (A)
  Conformer 2
(PDB) 		4qic (C)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 89 4.09   138 - 226
2 115 2.7   4 - 137
3 26 6.02   227 - 255

Sequence


           ________________________________________________________________________________________________________________________ 
 5uxw(A) : SLSTRIAPHLPYLRRFARSVTGSQSSGDAYVSAMLEALIADISIFPRASSDRIGTYWLFCHLFDQa------KLSYLTPRARQAFLLIAVEGFNEQEASEIMNLDARDFRKLLNQASIDI 
         :                                                                                                                          
 4qic(C) : SLSTRIAPHLPYLRRFARSVTGSQSSGDAYVSAMLEALVADISIFPRASCDRIGTYWLFCHLFDQTTPNIPEkLSYLTPRARQAFLLIAVEGFNEQEASEIMNLDARDFRKLLNQASIDI 
           ________________________________________________________________________________________________________________________ 

           137________________________________________________________________________________220__________________________________ 
 5uxw(A) : SQQIATQVMIIEDEPLIAMDIEQMVESLGHQVVGIARTRKEAVVMYHQKKPRLILADIQLADNSSGIDAVNDILQNDRIPVIFITAFPERLLTGERPEPTFLVTKPFNPDMVKALISQAL 
         :                                                                                                                          
 4qic(C) : SQQIATQVMIIEDEPLIAMDIEQMVESLGHQVVGIARTRKEAVVMYHQKKPRLILADIQLADNSSGIDAVNDILQNDRIPVIFITAFPERLLTGe---PTFLVTKPFNPDMVKALISQAL 
           137________________________________________________________________________________220__________________________________ 

           ____________                                                                                                             
 5uxw(A) : FFKENASKAALE                                                                                                             
         :                                                                                                                          
 4qic(C) : FFK*********                                                                                                             
           ____________                                                                                                             

Morph

Jmol._Canvas2D (Jmol) "jmolApplet"[x]

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		84.8
Translation
(A) 		-1.6
Closure
(%) 		71.5
Bending Residues
( green ) 		  137 - 138
Bending Region Analysis
Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( yellow ) 		3
Rotation Angle
(deg) 		142.9
Translation
(A) 		-1.4
Closure
(%) 		37.2
Bending Residues
( green ) 		  220 - 227
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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