Formate Dehydrogenase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Formate Dehydrogenase
  Conformer 1
(PDB) 		6juj (A)
  Conformer 2
(PDB) 		6juk (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 224 0.26   10 - 31   48 - 50   144 - 341   366 - 366
2 146 0.25   4 - 9   32 - 47   51 - 143   342 - 365   367 - 373

Sequence


           _______9____________________31______________47_50_______________________________________________________________________ 
 6juj(A) : AKVLCVLYDDPVDGYPKTYARDDLPKIDHYPGGQTLPTPKAIDFTPGQLLGSVSGELGLRKYLESNGHTLVVTSDKDGPDSVFERELVDADVVISQPFWPAYLTPERIAKAKNLKLALTA 
         :                                                                                                                          
 6juk(B) : AKVLCVLYDDPVDGYPKTYARDDLPKIDHYPGGQTLPTPKAIDFTPGQLLGSVSGELGLRKYLESNGHTLVVTSDKDGPDSVFERELVDADVVISQPFWPAYLTPERIAKAKNLKLALTA 
           _______9____________________31______________47_50_______________________________________________________________________ 

           ___________________143__________________________________________________________________________________________________ 
 6juj(A) : GIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTIAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHAT 
         :                                                                                                                          
 6juk(B) : GIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHAT 
           ___________________143__________________________________________________________________________________________________ 

           _________________________________________________________________________________________________341____________________ 
 6juj(A) : REDMYPVCDVVTLNIPLHSPTEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISGTTLTAQARYAAGTREILECFFEGRP 
         :                                                                                                                          
 6juk(B) : REDMYPVCDVVTLNIPLHPPTEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISGTTLTAQARYAAGTREILECFFEGRP 
           _________________________________________________________________________________________________341____________________ 

           _365_________________                                                                                                    
 6juj(A) : IRDEYLIVQGGALAGTGAHNY                                                                                                    
         :                                                                                                                          
 6juk(B) : IRDEYLIVQGGALA*******                                                                                                    
           _365_________________                                                                                                    

Morph

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This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		3.1
Translation
(A) 		0.2
Closure
(%) 		76.5
Bending Residues
( green ) 		  9 - 10
  31 - 32
  47 - 48
  50 - 51
  143 - 144
  341 - 342
  365 - 367
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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