Diol Dehydratase-Reactivating Factor Large Subunit

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Diol Dehydratase-Reactivating Factor Large Subunit
  Conformer 1
(PDB)
2d0p (A)
  Conformer 2
(PDB)
2d0o (C)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 412 0.91   79 - 364   412 - 420   434 - 533   554 - 570
2 186 1.31   4 - 78   365 - 411   421 - 433   534 - 553   571 - 601

Sequence


           _________________________________________________________________________75_____________________________________________ 
 2d0p(A) : MRYIAGIDIGNSSTEVALATLDEAGALTITHSALAETTGIKGTLRNVFGIQEALALVARGAGIAVSDISLIRINEATPVIGDVAMETITETIITESTMIGHNPKTPGGAGLGTGITITPQ 
         :                                                                                                                          
 2d0o(C) : MRYIAGIDIGNSSTEVALATLDEAGALTITHSALAETTGIKGTLRNVFGIQEALALVARGAGIAVSDISLIRINEATPVIGDVAMETITETIITESTMIGHNPKTPGGAGLGTGITITPQ 
           _________________________________________________________________________75_____________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2d0p(A) : ELLTRPADAPYILVVSSAFDFADIASVINASLRAGYQITGVILQRDDGVLVSNRLEKPLPIVDEVLYIDRIPLGMLAAIEVAVPGKVIETLSNPYGIATVFNLSPEETKNIVPMARALIG 
         :                                                                                                                          
 2d0o(C) : ELLTRPADAPYILVVSSAFDFADIASVINASLRAGYQITGVILQRDDGVLVSNRLEKPLPIVDEVLYIDRIPLGMLAAIEVAVPGKVIETLSNPYGIATVFNLSPEETKNIVPMARALIG 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2d0p(A) : NRSAVVVKTPSGDVKARAIPAGNLELLAQGRSVRVDVAAGAEAIMKAVDGCGRLDNVTGESGTNIGGMLEHVRQTMAELTNKPSSEIFIQDLLAVDTSVPVSVTGGLAGEFSLEQAVGIA 
         :                                                                                                                          
 2d0o(C) : NRSAVVVKTPSGDVKARAIPAGNLELLAQGRSVRVDVAAGAEAIMKAVDGCGRLDNVTGESGTNIGGMLEHVRQTMAELTNKPSSEIFIQDLLAVDTSVPVSVTGGLAGEFSLEQAVGIA 
           ________________________________________________________________________________________________________________________ 

           _364____________________________________________411______420__________433_______________________________________________ 
 2d0p(A) : SMVKSDRLQMAMIAREIEQKLNIDVQIGGAEAEAAILGALTTPGTTRPLAILDLGAGSTDASIINPKGDIIATHLAGAGDMVTMIIARELGLEDRYLAEEIKKYPLAKVESLFHLRHEDG 
         :                                                                                                                          
 2d0o(C) : SMVKSDRLQMAMIAREIEQKLNIDVQIGGAEAEAAILGALTTPGTTRPLAILDLGAGSTDASIINPKGDIIATHLAGAGDMVTMIIARELGLEDRYLAEEIKKYPLAKVESLFHLRHEDG 
           _364____________________________________________411______420__________433_______________________________________________ 

           ________________________________________________531___________________553_________565___________________________________ 
 2d0p(A) : SVQFFSTPLPPAVFARVCVVKADELVPLPGDLALEKVRAIRRSAKERVFVTNALRALRQVSPTGNIRDIPFVVLVGGSSLDFEVPQLVTDALAHYRLVAGRGNIRGSEGPRNAVATGLIL 
         :                                                                                                                          
 2d0o(C) : SVQFFSTPLPPAVFARVCVVKADELVPLPGDLALEKVRAIRRSAKERVFVTNALRALRQVSPTGNIRDIPFVVLVGGSSLDFEVPQLVTDALAHYRLVAGRGNIRGSEGPRNAVATGLIL 
           ________________________________________________531___________________553_________565___________________________________ 

           ______                                                                                                                   
 2d0p(A) : SWHKEF                                                                                                                   
         :                                                                                                                          
 2d0o(C) : SWHK**                                                                                                                   
           ______                                                                                                                   

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
11.1
Translation
(A)
0.7
Closure
(%)
97.5
Bending Residues
( green )
  75 - 81
  364 - 369
  411 - 412
  420 - 421
  433 - 434
  531 - 534
  553 - 554
  565 - 571
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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