Gelatinase A

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Gelatinase A
  Conformer 1
(PDB) 		1qib (A)
  Conformer 2
(PDB) 		1gen  
  Window Length 11
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 33 8.01   93 - 98   116 - 142
2 24 9.6   99 - 115   143 - 149

Sequence


           ______________________________________________________________________________________________________________________98 
 1qib(A) : *************************************************************************************************************RKPKWDKNQIT 
         :                                                                                                                          
 1gen    : LGPVTPEICKQDIVFDGIAQIRGEIFFFKDRFIWRTVTPRDKPMGPLLVATFWPELPEKIDAVYEAPQEEKAVFFAGNEYWIYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKT 
           _____________________________________________________________________________________________________________________580 

           ____________113________________________140______________________________________________________________________________ 
 1qib(A) : YRIIGYTPDLDPETVDDAFARAFQVWSDVTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGTGVGGDSHFDDDELWSLGKGVGYSLFLVAAHEFGHAMGLEHSQDPGA 
         :                                                                                                                          
 1gen    : YIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFKGAYYLKLENQSLKSVKFGSIKSDWLGC**************************************** 
           ____________595________________________622______________________________________________________________________________ 

           ______________________________                                                                                           
 1qib(A) : LMAPIYTYTKNFRLSQDDIKGIQELYGASP                                                                                           
         :                                                                                                                          
 1gen    : ******************************                                                                                           
           ______________________________                                                                                           

Morph
Morph animation in progress.
Status: Initialising

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		147.0
Translation
(A) 		10.3
Closure
(%) 		53.4
Bending Residues
( green ) 		  98 - 99
  113 - 117
  140 - 143
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

Download and extract PyMOL PML script file Download