Glycerol Kinase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glycerol Kinase
  Conformer 1
(PDB)
1glj (O)
  Conformer 2
(PDB)
1bu6 (Y)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 282 0.59   6 - 245   248 - 254   287 - 288   290 - 293   301 - 301   433 - 461   466 - 466   468 - 469
2 206 0.56   246 - 247   255 - 286   289 - 289   294 - 300   302 - 432   462 - 465   467 - 467   470 - 497

Sequence


           ________________________________________________________________________________________________________________________ 
 1glj(O) : EKKYIVALDQGTTSSRAVVMDHDANIISVSQREFEQIYPKPGWVEHDPMEIWATQSWTLVEVLAKADISSDQIAAIGITNQRETTIVWEKETGKPIYNAIVWQCRRTAEICEHLKRDGLE 
         :                                                                                                                          
 1bu6(Y) : EKKYIVALDQGTTSSRAVVMDHDANIISVSQREFEQIYPKPGWVEHDPMEIWATQSSTLVEVLTKADISSDQIAAIGITNQRETTIVWEKETGKPIYNAIVWQCRRTAEICEHLKRDGLE 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1glj(O) : DYIRSNTGLVIDPYFSGTKVKWILDHVEGSRERARRGELLFGTVDTWLIWKMTQGRVHVTDYTNASRTMLFNIHTLDWDDKMLEVLDIPREMLPEVRRSSEVYGQTNIG----tRIPISG 
         :                                                                                                                          
 1bu6(Y) : DYIRSNTGLVIDPYFSGTKVKWILDHVEGSRERARRGELLFGTVDTWLIWKMTQGRVHVTDYTNASRTMLFNIHTLDWDDKMLEVLDIPREMLPEVRRSSEVYGQTNIGGKGGTRIPISG 
           ________________________________________________________________________________________________________________________ 

           _245______254_____________________________286____293____300_____________________________________________________________ 
 1glj(O) : IAGDQQAALFGQLCVKEGMAKNTYGTGCFMLMNTGEKAVKSENGLLTTIACGPTGEVNYALEGAVFMAGASIQWLRDEMKLINDAYDSEYFATKVQNTNGVYVVPAFTGLGAPYWDPYAR 
         :                                                                                                                          
 1bu6(Y) : IAGDQQAALFGQLCVKEGMAKNTYGTGCFMLMNTGEKAVKSENGLLTTIACGPTGEVNYALEGAVFMAGASIQWLRDEMKLINDAYDSEYFATKVQNTNGVYVVPAFTGLGAPYWDPYAR 
           _245______254_____________________________286____293____300_____________________________________________________________ 

           ____________________________________________________________________432________________________459______________________ 
 1glj(O) : GAIFGLTRGVNANHIIRATLESIAYQTRDVLEAMQADSGIRLHALRVDGGAVANNFLMQFQSDILGTRVERPEVREVTALGAAYLAGLAVGFWQNLDELQEKAVIEREFRPGIETTERNY 
         :                                                                                                                          
 1bu6(Y) : GAIFGLTRGVNANHIIRATLESIAYQTRDVLEAMQADSGIRLHALRVDGGAVANNFLMQFQSDILGTRVERPEVREVTALGAAYLAGLAVGFWQNLDELQEKAVIEREFRPGIETTERNY 
           ____________________________________________________________________432________________________459______________________ 

           ___________________                                                                                                      
 1glj(O) : RYAGWKKAVKRAMAWEEH*                                                                                                      
         :                                                                                                                          
 1bu6(Y) : RYAGWKKAVKRAMAWEEHD                                                                                                      
           ___________________                                                                                                      

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
6.6
Translation
(A)
-0.3
Closure
(%)
95.2
Bending Residues
( green )
  245 - 248
  254 - 255
  286 - 290
  293 - 294
  300 - 302
  432 - 438
  459 - 470
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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