Hemoglobin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Hemoglobin
  Conformer 1
(PDB)
1aby (A)
  Conformer 2
(PDB)
1c7d (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 138 0.45   3 - 140
2 137 0.77   141 - 277

Sequence


           ________________________________________________________________________________________________________________________ 
 1aby(A) : MLSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHFDLSHGSAQVKGHGKKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTPA 
         :                                                                                                                          
 1c7d(A) : MLSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHFDLSHGSAQVKGHGKKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTPA 
           ________________________________________________________________________________________________________________________ 

           ________________139_____________________________________________________________________________________________________ 
 1aby(A) : VHASLDKFLASVSTVLTSKYRG-VLSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHFDLSHGSAQVKGHGKKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVN 
         :                                                                                                                          
 1c7d(A) : VHASLDKFLASVSTVLTSKYRGGVLSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHFDLSHGSAQVKGHGKKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVN 
           ________________139_____________________________________________________________________________________________________ 

           ____________________________________________                                                                             
 1aby(A) : FKLLSHCLLVTLAAHLPAEFTPAVHASLDKFLASVSTVLTSKYR                                                                             
         :                                                                                                                          
 1c7d(A) : FKLLSHCLLVTLAAHLPAEFTPAVHASLDKFLASVSTVLTSKYR                                                                             
           ____________________________________________                                                                             

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
6.7
Translation
(A)
0.1
Closure
(%)
22.4
Bending Residues
( green )
  139 - 145
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

Download and extract PyMOL PML script file Download