Hepatocyte Growth Factor

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Hepatocyte Growth Factor
  Conformer 1
(PDB)
1gmo (C)
  Conformer 2
(PDB)
1gmo (H)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 87 0.54   40 - 126
2 80 0.41   127 - 206

Sequence


           _______________________________________________________________________________________126______________________________ 
 1gmo(C) : NTIHEFKKSAKTTLIKIDPALKIKTKKVNTADQCADRCTRNKGLPFTCKAFVFDKARKQCLWFPFNSMSSGVKKEFGHEFDLYENKDYIRNCIIGKGRSYKGTVSITKSGIKCQPWSSMI 
         :                                                                                                                          
 1gmo(H) : *TIHEFKKSAKTTLIKIDPALKIKTKKVNTADQCADRCTRNKGLPFTCKAFVFDKARKQCLWFPFNSMSSGVKKEFGHEFDLYENKDYIRNCIIGKGRSYKGTVSITKSGIKCQPWSSMI 
           _______________________________________________________________________________________126______________________________ 

           ____________________________________________________                                                                     
 1gmo(C) : PHEHSFLPSSYRGKDLQENYCRNPRGEEGGPWCFTSNPEVRYEVCDIPQCSE                                                                     
         :                                                                                                                          
 1gmo(H) : PHEHSFLPSSYRGKDLQENYCRNPRGEEGGPWCFTSNPEVRYEVCDIPQCSE                                                                     
           ____________________________________________________                                                                     

Morph

Jmol._Canvas2D (Jmol) "jmolApplet"[x]
Morph animation in progress.
Status: Initialising

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
21.0
Translation
(A)
-1.2
Closure
(%)
94.1
Bending Residues
( green )
  109 - 113
  115 - 116
  119 - 120
  137 - 138
  141 - 144
  169 - 172
  174 - 176
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

Download and extract PyMOL PML script file Download