Immunoglobulin Igg Ru5

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Immunoglobulin Igg Ru5
  Conformer 1
(PDB)
1fe8 (I)
  Conformer 2
(PDB)
1fe8 (H)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 113 0.36   3 - 115
2 93 0.39   116 - 214

Sequence


           ________________________________________________________________________________________________________________115_____ 
 1fe8(I) : DVKLVQSGPGLVAPSQSLSITCTVSGFSLTTYGVSWVRQPPGKGLEWLGVIWGDGNTTYHSALISRLSISKDNSRSQVFLKLNSLHTDDTATYYCAGNYYGMDYWGQGTSVTVSSAETTA 
         :                                                                                                                          
 1fe8(H) : DVKLVQSGPGLVAPSQSLSITCTVSGFSLTTYGVSWVRQPPGKGLEWLGVIWGDGNTTYHSALISRLSISKDNSRSQVFLKLNSLHTDDTATYYCAGNYYGMDYWGQGTSVTVSSAETTA 
           ________________________________________________________________________________________________________________115_____ 

           __________________________________________________________________________________________                               
 1fe8(I) : PSVYKLEPVsSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIEPRG                               
         :                                                                                                                          
 1fe8(H) : PSVYKLEPVsSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIEPRG                               
           __________________________________________________________________________________________                               

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
9.8
Translation
(A)
0.7
Closure
(%)
16.8
Bending Residues
( green )
  115 - 118
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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