Aac(6')-II

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Aac(6')-II
  Conformer 1
(PDB)
2a4n (B)
  Conformer 2
(PDB)
1b87 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 46 0.2   63 - 72   92 - 109   143 - 154   171 - 176
2 79 0.47   3 - 62   73 - 91
3 49 0.29   110 - 142   155 - 170

Sequence


           ____________________________________________________________62________72_________________91_______________109___________ 
 2a4n(B) : MIISEFDRNNPVLKDQLSDLLRLTWPEEYGDSSAEEVEEMMNPERIAVAAVDQDELVGFIGAIPQYGITGWELHPLVVESSRRKNQIGTRLVNYLEKEVASRGGITIYLGTDDLDHGTTL 
         :                                                                                                                          
 1b87(A) : MIISEFDRNNPVLKDQLSDLLRLTWPEEYGDSSAEEVEEMMNPERIAVAAVDQDELVGFIGAIPQYGITGWELHPLVVESSRRKNQIGTRLVNYLEKEVASRGGITIYLGTDDLDHGTTL 
           ____________________________________________________________62________72_________________91_______________109___________ 

           ___________________142_________154_____________170___________                                                            
 2a4n(B) : SQTDLYEHTFDKVASIQNLREHPYEFYEKLGYKIVGVLPNANGWDKPDIWMAKTIIPRP**                                                            
         :                                                                                                                          
 1b87(A) : SQTDLYEHTFDKVASIQNLREHPYEFYEKLGYKIVGVLPNANGWDKPDIWMAKTIIPRPDS                                                            
           ___________________142_________154_____________170___________                                                            

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
5.3
Translation
(A)
0.0
Closure
(%)
41.5
Bending Residues
( green )
  62 - 63
  72 - 73
  91 - 93
Bending Region Analysis
Property Value
Fixed Domain
( blue )
1
Moving Domain
( yellow )
3
Rotation Angle
(deg)
7.4
Translation
(A)
-0.1
Closure
(%)
80.1
Bending Residues
( green )
  109 - 110
  142 - 143
  154 - 156
  170 - 171
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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