Aconitase (E.C.4.2.1.3)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Aconitase (E.C.4.2.1.3)
  Conformer 1
(PDB)
8acn  
  Conformer 2
(PDB)
5acn  
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 387 0.47   5 - 5   12 - 22   29 - 32   39 - 40   42 - 44   46 - 60   67 - 101   114 - 156   159 - 162   179 - 179   182 - 188   193 - 197   202 - 203   275 - 277   293 - 305   354 - 365   393 - 394   444 - 445   452 - 452   529 - 749
2 352 0.49   6 - 11   23 - 28   33 - 38   41 - 41   45 - 45   61 - 66   102 - 113   157 - 158   163 - 178   180 - 181   189 - 192   198 - 201   204 - 274   278 - 292   306 - 353   366 - 392   395 - 443   446 - 451   453 - 522

Sequence


           ____5____11_________22____28__32____38____44______________60____66________________________________101_________113_______ 
 8acn    : *RAKVAMSHFEPHEYIRYDLLEKNIDIVRKRLNRPLTLSEKIVYGHLDDPANQEIERGKTYLRLRPDRVAMQDATAQMAMLQFISSGLPKVAVPSTIHCDHLIEAQLGGEKDLRRAKDIN 
         :                                                                                                                          
 5acn    : XRAKVAMSHFEPHEYIRYDLLEKNIDIVRKRLNRPLTLSEKIVYGHLDDPANQEIERGKTYLRLRPDRVAMQDATAQMAMLQFISSGLPKVAVPSTIHCDHLIEAQLGGEKDLRRAKDIN 
           ____5____11_________22____28__32____38____44______________60____66________________________________101_________113_______ 

           _________________________________156___162_____________178_______188_192__197_201_______________________________________ 
 8acn    : QEVYNFLATAGAKYGVGFWRPGSGIIHQIILENYAYPGVLLIGTDSHTPNGGGLGGICIGVGGADAVDVMAGIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEY 
         :                                                                                                                          
 5acn    : QEVYNFLATAGAKYGVGFWRPGSGIIHQIILENYAYPGVLLIGTDSHTPNGGGLGGICIGVGGADAVDVMAGIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEY 
           _________________________________156___162_____________178_______188_192__197_201_______________________________________ 

           _______________________________274_______________292__________305_____________________________________________353_______ 
 8acn    : HGPGVDSISCTGMATICNMGAEIGATTSVFPYNHRMKKYLSKTGRADIANLADEFKDHLVPDSGCHYDQLIEINLSELKPHINGPFTPDLAHPVAEVGSVAEKEGWPLDIRVGLIGSCTN 
         :                                                                                                                          
 5acn    : HGPGVDSISCTGMATICNMGAEIGATTSVFPYNHRMKKYLSKTGRADIANLADEFKDHLVPDPGCHYDQVIEINLSELKPHINGPFTPDLAHPVAEVGSVAEKEGWPLDIRVGLIGSCTN 
           _______________________________274_______________292__________305_____________________________________________353_______ 

           _364_________________________392________________________________________________443_____451_____________________________ 
 8acn    : SSYEDMGRSAAVAKQALAHGLKCKSQFTITPGSEQIRATIERDGYAQVLRDVGGIVLANACGPCIGQWDRKDIKKGEKNTIVTSYNRNFTGRNDANPETHAFVTSPEIVTALAIAGTLKF 
         :                                                                                                                          
 5acn    : SSYEDMGRSAAVAKQALAHGLKCKSQFTITPGSEQIRATIERDGYAQVLRDVGGIVLANACGPCIGQWDRKDIKKGEKNTIVTSYNRNFTGRNDANPETHAFVTSPEIVTALAIAGTLKF 
           _364_________________________392________________________________________________443_____451_____________________________ 

           ______________________________________521_______________________________________________________________________________ 
 8acn    : NPETDFLTGKDGKKFKLEAPDADELPRAEFDPGQDTYQHPPKDSSGQRVDVSPTSQRLQLLEPFDKWDGKDLEDLQILIKVKGKCTTDHISAAGPWLKFRGHLDNISNNLLIGAINSENR 
         :                                                                                                                          
 5acn    : NPETDFLTGKDGKKFKLEAPDADELPRAEFDPGQDTYQHPPKDSSGQRVDVSPTSQRLQLLEPFDKWDGKDLEDLQILIKVKGKCTTDHISAAGPWLKFRGHLDNISNNLLIGAINIENR 
           ______________________________________521_______________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 8acn    : KANSVRNAVTQEFGPVPDTARYYKQHGIRWVVIGDENYGEGSSREHSALEPRFLGGRAIITKSFARIHETNLKKQGLLPLTFADPADYNKIHPVDKLTIQGLKDFAPGKPLTCIIKHPNG 
         :                                                                                                                          
 5acn    : KANSVRNAVTQEFGPVPDTARYYKQHGIRWVVIGDENYGEGSSREHSALEPRHLGGRAIITKSFARIHETNLKKQGLLPLTFADPADYNKIHPVDKLTIQGLKDFAPGKPLKCIIKHPNG 
           ________________________________________________________________________________________________________________________ 

           __________________________________                                                                                       
 8acn    : TQETILLNHTFNETQIEWFRAGSALNRMKELQQK                                                                                       
         :                                                                                                                          
 5acn    : TQETILLNHTFNETQIEWFRAGSALNRMKELQQK                                                                                       
           __________________________________                                                                                       

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
3.1
Translation
(A)
0.0
Closure
(%)
99.1
Bending Residues
( green )
  5 - 6
  11 - 12
  22 - 23
  28 - 29
  32 - 33
  38 - 42
  44 - 46
  60 - 61
  66 - 67
  101 - 102
  113 - 114
  156 - 159
  162 - 163
  178 - 182
  188 - 189
  192 - 193
  197 - 198
  201 - 204
  274 - 275
  277 - 278
  292 - 293
  305 - 306
  353 - 354
  364 - 366
  392 - 395
  443 - 446
  451 - 453
  521 - 529
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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