6A7 Fab Heavy Chain

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name 6A7 Fab Heavy Chain
  Conformer 1
(PDB)
2g5b (B)
  Conformer 2
(PDB)
2g5b (H)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 116 0.4   6 - 10   12 - 110
2 93 0.17   11 - 11   111 - 208

Sequence


           ________10____________________________________________________________________________________________________________10 
 2g5b(B) : EVNLVESGGGLVQPGGSLRLSCATSGFTFIDNYMSWVRQPPGKALEWLGFIRNKVNGYTTEYGPSVKGRFTISRDDSQSILYLQMNTLRTEDSATYYCVRDNGSDYRWYFDVWGAGTTVT 
         :                                                                                                                          
 2g5b(H) : EVNLVESGGGLVQPGGSLRLSCATSGFTFIDNYMSWVRQPPGKALEWLGFIRNKVNGYTTEYGPSVKGRFTISRDDSQSILYLQMNTLRTEDSATYYCVRDNGSDYRWYFDVWGAGTTVT 
           ________10____________________________________________________________________________________________________________10 

           9_______________________________________________________________________________________________                         
 2g5b(B) : VSSAKTTPPSVYPLAPnSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVP                         
         :                                                                                                                          
 2g5b(H) : VSSAKTTPPSVYPLAPnSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVP                         
           9_______________________________________________________________________________________________                         

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
4.6
Translation
(A)
-0.4
Closure
(%)
99.1
Bending Residues
( green )
  10 - 12
  109 - 116
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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