Alpha-Lytic Protease

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Alpha-Lytic Protease
  Conformer 1
(PDB)
3pro (D)
  Conformer 2
(PDB)
2pro (C)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 57 0.65   87 - 155
2 55 0.94   32 - 86

Sequence


           __________________________________________________________________________________86____________________________________ 
 3pro(D) : QVDPQLKFAMQRDLGIFPTQLPQYLQTEKLARTQAAAIEREFGAQFAGSWIERNEDGSFKLVAATSGARKSSTLGGVEVRNVRYSLKQLQSAMEQLDAGANlDGVQSWYVDPRSNAVVVK 
         :                                                                                                                          
 2pro(C) : ***************IFPTQLPQYLQTEKLARTQAAAIEREFGAQFAGSWIERNEDGSFKLVAATSGARKSSTLGGVEVRNVRYSLKQLQSAMEQLDAGA---gVQSWYVDPRSNAVVVK 
           __________________________________________________________________________________86____________________________________ 

           ________________________________                                                                                         
 3pro(D) : VDDGATDAGVDFVALSGADSAQVRIESSPGKL                                                                                         
         :                                                                                                                          
 2pro(C) : VDDGATDAGVDFVALSGADSAQVRIES*****                                                                                         
           ________________________________                                                                                         

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
13.1
Translation
(A)
0.5
Closure
(%)
49.0
Bending Residues
( green )
  86 - 87
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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