4-Alpha-Glucanotransferase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name 4-Alpha-Glucanotransferase
  Conformer 1
(PDB)
1k1x (B)
  Conformer 2
(PDB)
1k1y (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 410 0.63   13 - 23   82 - 87   90 - 106   111 - 117   123 - 126   131 - 131   133 - 139   170 - 171   269 - 442   470 - 624   632 - 657
2 221 0.82   4 - 12   24 - 81   88 - 89   107 - 110   118 - 122   127 - 130   132 - 132   140 - 169   172 - 268   443 - 469   625 - 631

Sequence


           __________12_________23________________________________________________________81____87________________106________117__1 
 1k1x(B) : *ERINFIFGIHNHQPLGNFGWVFEEAYNRSYRPFMEILEEFPEMKVNVHFSGPLLEWIEENKPDYLDLLRSLIKRGQLEIVVAGFYEPVLAAIPKEDRLVQIEMLKDYARKLGYDAKGVW 
         :                                                                                                                          
 1k1y(A) : MERINFIFGIHNHQPLGNFGWVFEEAYNRSYRPFMEILEEFPEMKVNVHFSGPLLEWIEENKPDYLDLLRSLIKRGQLEIVVAGFYEPVLAAIPKEDRLVQIEMLKDYARKLGYDAKGVW 
           __________12_________23________________________________________________________81____87________________106________117__1 

           22_126__________139_________________________167_________________________________________________________________________ 
 1k1x(B) : LTERVWQPELVKSLREAGIEYVVVDDYHFMSAGLSKEELFWPYYTEDGGEVITVFPIDEKLRYLIPFRPVKKTIEYLESLTSDDPSKVAVFHDDGEKFGVWPGTYEWVYEKGWLREFFDA 
         :                                                                                                                          
 1k1y(A) : LTERVWQPELVKSLREAGIEYVVVDDYHFMSAGLSKEELFWPYYTEDGGEVITVFPIDEKLRYLIPFRPVKKTIEYLESLTSDDPSKVAVFHDDGEKFGVWPGTYEWVYEKGWLREFFDA 
           22_126__________139_________________________167_________________________________________________________________________ 

           _________________________268____________________________________________________________________________________________ 
 1k1x(B) : ITSNEKINLMTYSEYLSKFTPRGLVYLPIASYFEMSEWSLPAKQAKLFVEFVEQLKEEGKFEKYRVFVRGGIWKNFFFKYPESNFMHKRMLMVSKAVRDNPEARKYILKAQCNDAYWHGV 
         :                                                                                                                          
 1k1y(A) : ITSNEKINLMTYSEYLSKFTPRGLVYLPIASYFEMSEWSLPAKQAKLFVEFVEQLKEEGKFEKYRVFVRGGIWKNFFFKYPESNFMHKRMLMVSKAVRDNPEARKYILKAQCNDAYWHGV 
           _________________________268____________________________________________________________________________________________ 

           _______________________________________________________________________________442______________________________________ 
 1k1x(B) : FGGIYLPHLRRTVWENIIKAQRYLKPENKILDVDFDGRAEIMVENDGFIATIKPHYGGSIFELSSKRKAVNYNDVLPRRWEHYHEVqIPEEIRRELAYDWQLRAILQDHFIKPEETLDNY 
         :                                                                                                                          
 1k1y(A) : FGGIYLPHLRRTVWENIIKAQRYLKPENKILDVDFDGRAEIMVENDGFIATIKPHYGGSIFELSSKRKAVNYNDVLPRRWEHYHE-qIPEEIRRELAYDWQLRAILQDHFIKPEETLDNY 
           _______________________________________________________________________________442______________________________________ 

           _______________________________________________________________________________________________________________________6 
 1k1x(B) : RLVKYHELGDFVNQPYEYEMIENGVKLWREGGVYAEEKIPARVEKKIELTEDGFIAKYRVLLEKPYKALFGVEINLAVHSVMEKPEEFEAKEFEVNDPYGIGKVRIELDKAAKVWKFPIK 
         :                                                                                                                          
 1k1y(A) : RLVKYHELGDFVNQPYEYEMIENGVKLWREGGVYAEEKIPARVEKKIELTEDGFIAKYRVLLEKPYKALFGVEINLAVHSVMEKPEEFEAKEFEVNDPYGIGKVRIELDKAAKVWKFPIK 
           _______________________________________________________________________________________________________________________6 

           24____631____________________________                                                                                    
 1k1x(B) : TLSQSEAGWDFIQQGVSYTMLFPIEKELEFTVRFREL                                                                                    
         :                                                                                                                          
 1k1y(A) : TLSQSEAGWDFIQQGVSYTMLFPIEKELEFTVRFREL                                                                                    
           24____631____________________________                                                                                    

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
5.7
Translation
(A)
-0.1
Closure
(%)
98.2
Bending Residues
( green )
  12 - 13
  23 - 24
  81 - 82
  87 - 90
  106 - 111
  117 - 118
  122 - 123
  126 - 127
  129 - 133
  139 - 140
  167 - 172
  268 - 277
  442 - 471
  624 - 625
  631 - 632
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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