Alpha-Catenin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Alpha-Catenin
  Conformer 1
(PDB)
1dow (A)
  Conformer 2
(PDB)
1dov (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 118 0.57   139 - 259
2 53 1.14   84 - 138

Sequence


           ______________________________________________________________________________137_______________________________________ 
 1dow(A) : KAHVLAASVEQATENFLEKGDKIAKESQFLKEELVVAVEDVRKQGDL-kSAAGEFADDPCSSVKRGN-vRAARALLSAVTRLLILAD-aDVYKLLVQLKVVEDGILKLRNAGNEQDLGIQ 
         :                                                                                                                          
 1dov(A) : *************************ESQFLKEELVVAVEDVRKQGDLMKSAAGEFADDPCSSVKRGNMVRAARALLSAVTRLLILADMADVYKLLVQLKVVEDGILKLRNAGNEQDLGIQ 
           ______________________________________________________________________________137_______________________________________ 

           ______________________________________________________________________________________                                   
 1dow(A) : YKALKPEVDKLNI-aAKRQQELKDVGNRDQ-aAARGILQKNVPILYTASQACLQHPDVAAYKANRDLIYKQLQQAVTGISNAAQA*                                   
         :                                                                                                                          
 1dov(A) : YKALKPEVDKLNIMAAKRQQELKDVGNRDQMAAARGILQKNVPILYTASQACLQHPDVAAYKANRDLIYKQLQQAVTGISNAAQAT                                   
           ______________________________________________________________________________________                                   

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
23.3
Translation
(A)
0.1
Closure
(%)
3.3
Bending Residues
( green )
  137 - 139
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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