Amidase Operon

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Amidase Operon
  Conformer 1
(PDB)
1pea  
  Conformer 2
(PDB)
1qo0 (B)
  Window Length 13
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 261 0.64   14 - 139   214 - 229   245 - 363
2 89 0.61   140 - 213   230 - 244

Sequence


           ________________________________________________________________________________________________________________________ 
 1pea    : *PLIGLLFSETGVTADIERSQRYGALLAVEQLNREGGVGGRPIETLSQDPGGDPDRYRLCAEDFIRNRGVRFLVGCYMSHTRKAVMPVVERADALLCYPTPYEGFEYSPNIVYGGPAPNQ 
         :                                                                                                                          
 1qo0(B) : RPLIGLLFSETGVTADIERSQRYGALLAVEQLNREGGVGGRPIETLSQDPGGDPDRYRLCAEDFIRNRGVRFLVGCYMSHTRKAVMPVVERADALLCYPTPYEGFEYSPNIVYGGPAPNQ 
           ________________________________________________________________________________________________________________________ 

           ________137_________________________________________________________________________213________224_________________244__ 
 1pea    : NSAPLAAYLIRHYGERVVFIGSDYIYPRESNHVMRHLYRQHGGTVLEEIYIPLYPSDDDLQRAVERIYQARADVVFSTVVGTGTAELYRAIARRYGDGRRPPIASLTTSEAEVAKMESDV 
         :                                                                                                                          
 1qo0(B) : NSAPLAAYLIRHYGERVVFIGSDYIYPRESNHVMRHLYRQHGGTVLEEIYIPLYPSDDDLQRAVERIYQARADVVFSTVVGTGTAELYRAIARRYGDGRRPPIASLTTSEAEVAKMESDV 
           ________137_________________________________________________________________________213________224_________________244__ 

           ________________________________________________________________________________________________________________________ 
 1pea    : AEGQVVVAPYFSSIDTPASRAFVQACHGFFPENATITAWAEAAYWQTLLLGRAAQAAGNWRVEDVQRHLYDIDIDAPQGPVRVERQNNHSRLSSRIAEIDARGVFQVRWQSPEPIRPDPY 
         :                                                                                                                          
 1qo0(B) : AEGQVVVAPYFSSIDTPASRAFVQACHGFFPENATITAWAEAAYWQTLLLGRAAQAAGNWRVEDVQRHLYDIDIDAPQGPVRVERQNNHSRLSSRIAEIDARGVFQVRWQSPEPIRPDPY 
           ________________________________________________________________________________________________________________________ 

           ______________                                                                                                           
 1pea    : VVVHNLDDW*****                                                                                                           
         :                                                                                                                          
 1qo0(B) : VVVHNLDDWSASMG                                                                                                           
           ______________                                                                                                           

Morph

Morph animation in progress.
Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
4.8
Translation
(A)
-0.6
Closure
(%)
98.9
Bending Residues
( green )
  137 - 140
  213 - 214
  224 - 230
  244 - 245
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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