Apolipoprotein A-II

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Apolipoprotein A-II
  Conformer 1
(PDB)
1l6l (S)
  Conformer 2
(PDB)
1l6l (F)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 39 2.58   35 - 37   40 - 75
2 30 3.33   6 - 34   38 - 39

Sequence


           _______________________________34___________________________________________                                             
 1l6l(S) : **EPCVESLVSQYFQTVTDYGKDLMEKVKSPELQAEAKSYFEKSKEQLTPLIKKAGTELVNFLSYFVELGTQPATQ                                             
         :                                                                                                                          
 1l6l(F) : AKEPCV-sLVSQYFQTVTDYGKDLMEKVKSPELQAEAKSYFEKSKEQLTPLIKKAGTELVNFLSYFVELGTQPATQ                                             
           _______________________________34___________________________________________                                             

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
121.2
Translation
(A)
2.8
Closure
(%)
11.0
Bending Residues
( green )
  34 - 40
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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