Arginine Repressor

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Arginine Repressor
  Conformer 1
(PDB)
1b4a (C)
  Conformer 2
(PDB)
1b4a (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 84 0.78   64 - 147
2 58 0.44   6 - 63

Sequence


           _______________________________________________________60_______________________________________________________________ 
 1b4a(C) : GQRHIKIREIIMSNDIETQDELVDRLREAGFNVTQATVSRDIKEMQLVKVPMANGRYKYSLPSDQRFNPLQKLKRALVDVFIKLDGTGNLLVLRTLPGNAHAIGVLLDNLDWDEIVGTIC 
         :                                                                                                                          
 1b4a(A) : GQRHIKIREIIMSNDIETQDELVDRLREAGFNVTQATVSRDIKEMQLVKVPMANGRYKYSLPSDQRFNPLQKLKRALVDVFIKLDGTGNLLVLRTLPGNAHAIGVLLDNLDWDEIVGTIC 
           _______________________________________________________60_______________________________________________________________ 

           __________________________                                                                                               
 1b4a(C) : GDDTCLIICRTPKDAKKVSNQLLSML                                                                                               
         :                                                                                                                          
 1b4a(A) : GDDTCLIICRTPKDAKKVSNQLLSML                                                                                               
           __________________________                                                                                               

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
10.8
Translation
(A)
-2.8
Closure
(%)
18.7
Bending Residues
( green )
  60 - 72
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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