Aspartate Beta-Semialdehyde Dehydrogenase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Aspartate Beta-Semialdehyde Dehydrogenase
  Conformer 1
(PDB)
2gz1 (B)
  Conformer 2
(PDB)
2gyy (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 219 0.29   107 - 110   114 - 116   124 - 335
2 116 0.75   4 - 106   111 - 113   117 - 123   336 - 354

Sequence


           ______________________________________________________________________________________________________106_110__________1 
 2gz1(B) : GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKDQDITIEETTETAFEGVDIALFSAGSSTSAKYAPYAVKAGVVVVDNTSYFRQNPDVPLVVPEVNAHALDAHNG 
         :                                                                                                                          
 2gyy(B) : GYTVAVVGATgA---QMIKMLEESTLPIDKIRYL-------------dQDITIEETTETAFEGVDIALFSAGSSTSAKYAPYAVKAGVVVVDNTSYFRQNPDVPLVVPEVNAHALDAHNG 
           ______________________________________________________________________________________________________106_110__________1 

           23______________________________________________________________________________________________________________________ 
 2gz1(B) : IIACPNCSTIQMMVALEPVRQKWGLDRIIVSTYQAVSGAGMGAILETQRELREVLNDGVKPCDLHAEILPSGGDKKHYPIAFNALPQIDVFTDNDYTYEEMKMTKETKKIMEDDSIAVSA 
         :                                                                                                                          
 2gyy(B) : IIACPNCSTIQMMVALEPVRQKWGLDRIIVSTYQAVSGAGMGAILETQRELREVLNDGVKPCDLHAEILPSGGDKKHYPIAFNALPQIDVFTDNDYTYEEMKMTKETKKIMEDDSIAVSA 
           23______________________________________________________________________________________________________________________ 

           __________________________________________________________________________________________334________________________    
 2gz1(B) : TCVRIPVLSAHSESVYIETKEVAPIEEVKAAIAAFPGAVLEDDVAHQIYPQAINAVGSRDTFVGRIRKDLDAEKGIHMWVVSDNLLKGAAWNSVQIAETLHERGLVRPTAELKFELK    
         :                                                                                                                          
 2gyy(B) : TCVRIPVLSAHSESVYIETKEVAPIEEVKAAIAAFPGAVLEDDVAHQIYPQAINAVGSRDTFVGRIRKDLDAEKGIHMWVVSDNLLKGAAWNSVQIAETLHERGLVRPTAELKFE**    
           __________________________________________________________________________________________334________________________    

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
8.1
Translation
(A)
0.2
Closure
(%)
96.0
Bending Residues
( green )
  106 - 107
  110 - 111
  113 - 117
  123 - 126
  334 - 336
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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