Atp-Dependent RNA Helicase Ddx48

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Atp-Dependent RNA Helicase Ddx48
  Conformer 1
(PDB)
2j0u (A)
  Conformer 2
(PDB)
2j0u (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 184 0.94   201 - 405
2 156 0.79   40 - 200

Sequence


           ________________________________________________________________________________________________________________________ 
 2j0u(A) : PTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQCLDIQVRETQALILAPTRELAVQVQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQ 
         :                                                                                                                          
 2j0u(B) : PTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQCLDIQVRETQALILAPTRELAVQVQKGLLALGDYMNVQSHACIg-----EDIRKLDYGQ 
           ________________________________________________________________________________________________________________________ 

           _______________________________________199______________________________________________________________________________ 
 2j0u(A) : HVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD---i 
         :                                                                                                                          
 2j0u(B) : HVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEVLEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTI 
           _______________________________________199______________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2j0u(A) : TQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARdVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAVNFVKNDDIRVLRDIEQYYSTQ 
         :                                                                                                                          
 2j0u(B) : TQAVIFCNTKRKVDWLTEKMRE---tVS-------qKERESIMKEFRSGASRVLIST------vPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAVNFVKNDDIRVLRDIEQYYSTQ 
           ________________________________________________________________________________________________________________________ 

           _________                                                                                                                
 2j0u(A) : IDEMPMNVA                                                                                                                
         :                                                                                                                          
 2j0u(B) : IDEMPMNV*                                                                                                                
           _________                                                                                                                

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
7.7
Translation
(A)
-0.5
Closure
(%)
98.1
Bending Residues
( green )
  199 - 201
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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