Atp(gtp)binding Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Atp(gtp)binding Protein
  Conformer 1
(PDB)
1yrb (B)
  Conformer 2
(PDB)
1yr6 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 219 1.23   499 - 179   205 - 242
2 25 1.19   180 - 204

Sequence


           ________________________________________________________________________________________________________________________ 
 1yrb(B) : MRGSHHHHHHGMASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQM 
         :                                                                                                                          
 1yr6(A) : **********GMASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQM 
           ________________________________________________________________________________________________________________________ 

           ______________________________________________________________________179_____________________203_______________________ 
 1yrb(B) : ETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKT 
         :                                                                                                                          
 1yr6(A) : ETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKT 
           ______________________________________________________________________179_____________________203_______________________ 

           ____________________                                                                                                     
 1yrb(B) : REGFEDLETLAYEHYCTCGD                                                                                                     
         :                                                                                                                          
 1yr6(A) : REGFEDLETLAYEHYCTC**                                                                                                     
           ____________________                                                                                                     

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
20.8
Translation
(A)
0.4
Closure
(%)
87.6
Bending Residues
( green )
  179 - 180
  203 - 205
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

Download and extract PyMOL PML script file Download