At-Rich Dna-Binding Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name At-Rich Dna-Binding Protein
  Conformer 1
(PDB)
2dt5 (A)
  Conformer 2
(PDB)
1xcb (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 109 0.62   77 - 186
2 73 1.39   4 - 76

Sequence


           _________________________________________________________________________76_____________________________________________ 
 2dt5(A) : KVPEAAISRLITYLRILEELEAQGVHRTSSEQLGGLAQVTAFQVRKDLSYFGSYGTRGVGYTVPVLKRELRHILGLNRKWGLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEKVGRP 
         :                                                                                                                          
 1xcb(A) : KVPEAAISRLITYLRILEELEAQGVHRTSSEQLGELAQVTAFQVRKDLSYFGSYGTRGVGYTVPVLKRELRHILGLNRKWGLCIVG-gRLGSALADYPGFGESFELRGFFDVDPEKVGRP 
           _________________________________________________________________________76_____________________________________________ 

           __________________________________________________________________________________________                               
 2dt5(A) : VRGGVIEHVDLLPQRVPGRIEIALLTVPREAAQKAADLLVAAGIKGILNFAPVVLEVPKEVAVENVDFLAGLTRLSFAILNPKWREEMMG                               
         :                                                                                                                          
 1xcb(A) : VRGGVIEHVDLLPQRVPGRIEIALLTVPREAAQKAADLLVAAGIKGILNFAPVVLEVPKEVAVENVDFLAGLTRLSFAILNPKWR*****                               
           __________________________________________________________________________________________                               

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
20.1
Translation
(A)
-0.6
Closure
(%)
70.0
Bending Residues
( green )
  76 - 77
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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