Calcium-Dependent Protein Kinase, Isoform Ak1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Calcium-Dependent Protein Kinase, Isoform Ak1
  Conformer 1
(PDB)
2aao (A)
  Conformer 2
(PDB)
2aao (B)
  Window Length 9
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 78 1.05   16 - 96
2 42 0.47   97 - 154

Sequence


           _____________________________________________________________________________89_________________________________________ 
 2aao(A) : NKFKKaLRVIAESLSEEEIAGLKEfNiDADKSGQITFEELKAGLKRVGANLKESEILDLqAADVDNSGTIDYKEFIAATLHLNKIEREDHLFAAFTYFDKDGSGYITPDELQQACEEeEL 
         :                                                                                                                          
 2aao(B) : NKFKKaLRVIAESLSEEEIAGLKEfNiDADKSGQITFEELKAGLKRVGANLKESEILDLqAADVDNSGTIDYKEFIAATLHLNKIEREDHLFAAFTYFDKDGSGYITPDELQQ------- 
           _____________________________________________________________________________89_________________________________________ 

           ___________________                                                                                                      
 2aao(A) : rDVDQDNDGRIDYNEFVAq                                                                                                      
         :                                                                                                                          
 2aao(B) : rDVDQDNDGRIDYNEFVAq                                                                                                      
           ___________________                                                                                                      

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
10.3
Translation
(A)
0.2
Closure
(%)
49.3
Bending Residues
( green )
  89 - 98
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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