Cellobiohydrolase II

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Cellobiohydrolase II
  Conformer 1
(PDB)
1ocj (A)
  Conformer 2
(PDB)
2bvw (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 236 0.65   93 - 98   134 - 186   189 - 306   312 - 353   380 - 396
2 120 0.77   99 - 133   187 - 188   307 - 311   354 - 379   397 - 448

Sequence


           ______98________________________________133______________________________________________182____________________________ 
 1ocj(A) : GNPFEGVQLWANNYYRSEVHTLAIPQITDPALRAAASAVAEVPSFQWLDRNVTVDTLLVQTLSEIREANQAGANPQYAAQIVVYDLPDRDCAAAASNGEWAIANNGVNNYKAYINRIREI 
         :                                                                                                                          
 2bvw(B) : GNPFEGVQLWANNYYRSEVHTLAIPQITDPALRAAASAVAEVPSFQWLDRNVTVDTLLVQTLSEIREANQAGANPQYAAQIVVYDLPDRDCAAAASNGEWAIANNGVNNYKAYINRIREI 
           ______98________________________________133______________________________________________182____________________________ 

           _____________________________________________________________________________________________306__311___________________ 
 1ocj(A) : LISFSDVRTILVIEPDSLANMVTNMNVPKCSGAASTYRELTIYALKQLDLPHVAMYMDAGHAGWLGWPANIQPAAELFAKIYEDAGKPRAVRGLATNVANYNAWSVSSPPPYTSPNPNYD 
         :                                                                                                                          
 2bvw(B) : LISFSDVRTILVIEPDSLANMVTNMNVPKCSGAASTYRELTIYALKQLDLPHVAMYMDAGHAGWLGWPANIQPAAELFAKIYEDAGKPRAVRGLATNVANYNAWSVSSPPPYTSPNPNYD 
           _____________________________________________________________________________________________306__311___________________ 

           ____________________353_______________________379______________396______________________________________________________ 
 1ocj(A) : EKHYIEAFRPLLEARGFPAQFIVDQGRSGKQPTGQKEWGHWCNAIGTGFGMRPTANTGHQYVDAFVWVKPGGECDGTSDTTAARYAYHCGLEDALKPAPEAGQWFNEYFIQLLRNANPPF 
         :                                                                                                                          
 2bvw(B) : EKHYIEAFRPLLEARGFPAQFIVDQGRSGKQPTGQKEWGHWCNAIGTGFGMRPTANTGHQYVDAFVWVKPGGECDGTSDTTAARYDYHCGLEDALKPAPEAGQWFNEYFIQLLRNANPPF 
           ____________________353_______________________379______________396______________________________________________________ 

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
9.5
Translation
(A)
0.6
Closure
(%)
53.3
Bending Residues
( green )
  98 - 99
  133 - 134
  182 - 189
  306 - 307
  311 - 312
  353 - 354
  379 - 380
  396 - 397
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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