Claret Segregational Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Claret Segregational Protein
  Conformer 1
(PDB)
1n6m (B)
  Conformer 2
(PDB)
2ncd (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 277 1.35   348 - 666
2 43 1.1   305 - 347

Sequence


           _____________________________________________________347________________________________________________________________ 
 1n6m(B) : MHAALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRGNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQSDI 
         :                                                                                                                          
 2ncd(A) : ***********LRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRGNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQSDI 
           _____________________________________________________347________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1n6m(B) : FEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNE---------------------tEETVLDPNHLRHL 
         :                                                                                                                          
 2ncd(A) : FEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHL 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1n6m(B) : MHTAKMNRATASTA----sSRSHAVTKLELIGRHAe---ISVGSINLVDLAGSESPnIKRSLSELTNVILALLQKQ----yRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSL 
         :                                                                                                                          
 2ncd(A) : MHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEISVGSINLVDLAGSESPnINRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSL 
           ________________________________________________________________________________________________________________________ 

           _________                                                                                                                
 1n6m(B) : RFAASVN**                                                                                                                
         :                                                                                                                          
 2ncd(A) : RFAASVNSC                                                                                                                
           _________                                                                                                                

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
79.9
Translation
(A)
0.3
Closure
(%)
44.1
Bending Residues
( green )
  347 - 349
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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