Coat Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Coat Protein
  Conformer 1
(PDB)
1opo (C)
  Conformer 2
(PDB)
1opo (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 169 1.43   86 - 245   252 - 260
2 92 0.39   246 - 251   261 - 346

Sequence


           ________________________________________________________________________________________________________________________ 
 1opo(C) : KSMTMSKTELLSTVKGTTGVIPSFEDWVVSPRNVAVFPQLSLLATNFNKYRITALTVKYSPACSFETNGRVALGFNDDASDTPPTTKVGFYDLGKHVETAAQTAKDLVIPVDGKTRFIRD 
         :                                                                                                                          
 1opo(A) : *SMTMSKTELLSTVKGTTGVIPSFEDWVVSPRNVAVFPQLSLLATNFNKYRITALTVKYSPACSFETNGRVALGFNDDASDTPPTTKVGFYDLGKHVETAAQTAKDLVIPVDGKTRFIRD 
           ________________________________________________________________________________________________________________________ 

           __________________________________________245___251_____________________________________________________________________ 
 1opo(C) : SASDDAKLVDFGRIVLSTYGFDKADTVVGELFIQYTIVLSDPTKTAKISQASNDKVSDGPTYVVPSVNGNELQLRVVAAGKWCIIVRGTVEGGFTKPTLIGPGISGDVDYESARPIAVCE 
         :                                                                                                                          
 1opo(A) : SASDDAKLVDFGRIVLSTYGFDKADTVVGELFIQYTIVLSDPTKTAKISQASNDKVSDGPTYVVPSVNGNELQLRVVAAGKWCIIVRGTVEGGFTKPTLIGPGISGDVDYESARPIAVCE 
           __________________________________________245___251_____________________________________________________________________ 

           ____________________________                                                                                             
 1opo(C) : LVTQMEGQILKITKTSAEQPLQWVVYRM                                                                                             
         :                                                                                                                          
 1opo(A) : LVTQMEGQILKITKTSAEQPLQWVVYRM                                                                                             
           ____________________________                                                                                             

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
18.5
Translation
(A)
-0.4
Closure
(%)
68.9
Bending Residues
( green )
  245 - 246
  251 - 261
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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