C-Phycocyanin Beta Subunit

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name C-Phycocyanin Beta Subunit
  Conformer 1
(PDB) 		1on7 (B)
  Conformer 2
(PDB) 		1jbo (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 119 0.51   3 - 46   93 - 125   131 - 172
2 48 0.4   47 - 92   126 - 130

Sequence


           ____________________________________________46__________________________________________92______________________________ 
 1on7(B) : MLDAFAKVVAQADARGEFLTNAQFDALSNLVKEGNKRLDAVNRITSNASTIVANAARALFAEQPQLIQPGGNAYTNRRMAACLRDMEIILRYVTYAILAGDSSVLDDRCLNGLRETYQAL 
         :                                                                                                                          
 1jbo(B) : MLDAFAKVVAQADARGEFLTNAQFDALSNLVKEGNKRLDAVNRITSNASTIVANAARALFAEQPQLIQPGG-aYTNRRMAACLRDMEIILRYVTYAILAGDSSVLDDRCLNGLRETYQAL 
           ____________________________________________46__________________________________________92______________________________ 

           125__130____________________________________________                                                                     
 1on7(B) : GTPGSSVAVAIQKMKDAAIAIANDPNGITPGDCSALMSEIAGYFDRAAAAVA                                                                     
         :                                                                                                                          
 1jbo(B) : GTPGSSVAVAIQKMKDAAIAIANDPNGITPGDCSALMSEIAGYFDRAAAAVA                                                                     
           125__130____________________________________________                                                                     

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		6.4
Translation
(A) 		-0.1
Closure
(%) 		85.1
Bending Residues
( green ) 		  46 - 47
  92 - 93
  125 - 126
  130 - 131
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: missing

PyMOL Script

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