Cullin Homolog 1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Cullin Homolog 1
  Conformer 1
(PDB)
1ldj (A)
  Conformer 2
(PDB)
1u6g (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 472 1.51   246 - 252   261 - 269   272 - 272   293 - 295   306 - 313   321 - 324   330 - 774
2 236 1.88   19 - 245   253 - 260   270 - 271   273 - 292   296 - 305   314 - 320   325 - 329

Sequence


           ________________________________________________________________________________________________________________________ 
 1ldj(A) : LDQIWDDLRAGIQQVYTRQSMAKSRYMELYTHVYNYCTSvGLELYKRLKEFLKNYLTNLLKDGEDLMDESVLKFYTQQWEDYRFSSKVLNGICAYLNRHWVRREC---yEIYSLALVTWR 
         :                                                                                                                          
 1u6g(A) : LDQIWDDLRAGIQQVYTRQSMAKSRYMELYTHVYNYCTSvGLELYKRLKEFLKNYLTNLLKDGEDLMDESVLKFYTQQWEDYRFSSKVLNGICAYLNRHWVRRECkGIYEIYSLALVTWR 
           ________________________________________________________________________________________________________________________ 

           __________________________________________________________________________245____252_____260______269___________________ 
 1ldj(A) : DCLFRPLNKQVTNAVLKLIEKERNGETINTRLISGVVQSYVELGLNEDDAFAKGPTLTVYKESFESQFLADTERFYTRESTEFLQQNPVTEYMKKAEARLLEEQRRVQVYLHESTQDELA 
         :                                                                                                                          
 1u6g(A) : DCLFRPLNKQVTNAVLKLIEKERNGETINTRLISGVVQSYVELGL--------gPTLTVYKESFESQFLADTERFYTRESTEFLQQNPVTEYMKKAEARLLEEQRRVQVYLHESTQDELA 
           __________________________________________________________________________244____251_____259______268___________________ 

           _292__________305_____313____320_324__329_______________________________________________________________________________ 
 1ldj(A) : RKCEQVLIEKHLEIFHTEFQNLLDADKNEDLGRMYNLVSRIQDGLGELKKLLETHIHNQGLAAIEKCGEAALNDPKMYVQTVLDVHKKYNALVMSAFNNDAGFVAALDKACGRFINNNAV 
         :                                                                                                                          
 1u6g(A) : RKCEQVLIEKHLEIFHTEFQNLLDADKNEDLGRMYNLVSRIQDGLGELKKLLETHIHNQGLAAIEKCGEAALNDPKMYVQTVLDVHKKYNALVMSAFNNDAGFVAALDKACGRFINNNAV 
           _291__________304_____312____319_323__328_______________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1ldj(A) : TKMAQSSSKSPELLARYCDSLLKKSSKNPEEAELEDTLNQVMVVFKYIEDKDVFQKFYAKMLAKRLVHQNSASDDAEASMISKLKQACGFEYTSKLQRMFQDIGVSKDLNEQFKKHLTNS 
         :                                                                                                                          
 1u6g(A) : TKMAQSSSKSPELLARYCDSLLKK-----eEAELEDTLNQVMVVFKYIEDKDVFQKFYAKMLAKRLVHQNSASDDAEASMISKLKQACGFEYTSKLQRMFQDIGVSKDLNEQFKKHLTNS 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1ldj(A) : EPLDLDFSIQVLSSGSWPFQQSCTFALPSELERSYQRFTAFYASRHSGRKLTWLYQLSKGELVTNCFKNRYTLQASTFQMAILLQYNTEDAYTVQQLTDSTQIKMDILAQVLQILLKSKL 
         :                                                                                                                          
 1u6g(A) : EPLDLDFSIQVLSSGSWPFQQSCTFALPSELERSYQRFTAFYASRHSGRKLTWLYQLSKGELVTNCFKNRYTLQASTFQMAILLQYNTEDAYTVQQLTDSTQIKMDILAQVLQILLKSKL 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1ldj(A) : LVLEDENANVDEVELKPDTLIKLYLGYKNKKLRVNINVPMKTEQKQEQETTHKNIEEDRKLLIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVDGE 
         :                                                                                                                          
 1u6g(A) : LVLEDENANVDEVELKPDTLIKLYLGYKNKKLRVNINVPMKTEQKQEQETTHKNIEEDRKLLIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVDGE 
           ________________________________________________________________________________________________________________________ 

           ________                                                                                                                 
 1ldj(A) : KDTYSYLA                                                                                                                 
         :                                                                                                                          
 1u6g(A) : KDTYSYLA                                                                                                                 
           ________                                                                                                                 

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
14.5
Translation
(A)
-0.2
Closure
(%)
53.2
Bending Residues
( green )
  245 - 246
  252 - 253
  260 - 261
  269 - 273
  292 - 293
  295 - 296
  305 - 306
  313 - 314
  320 - 321
  324 - 325
  329 - 330
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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