Cyclopropane-Fatty-Acyl-Phospholipid Synthase 1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Cyclopropane-Fatty-Acyl-Phospholipid Synthase 1
  Conformer 1
(PDB)
1kph (D)
  Conformer 2
(PDB)
1kp9 (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 238 1.76   20 - 172   201 - 285
2 28 3.66   173 - 200

Sequence


           ________________________________________________________________________________________________________________________ 
 1kph(D) : DELKPHFANVQAHYDLSDDFFRLFLDPTQTYSCAYFERDDMTLQEAQIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAG 
         :                                                                                                                          
 1kp9(B) : ***************LSDDFFRLFLDPTQTYSCAYFERDDMTLQEAQIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAG 
           ________________________________________________________________________________________________________________________ 

           ______________________________________________171__________________________200__________________________________________ 
 1kph(D) : WEQFDEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIPMVQECASANGFTVTRVQSLQPHYAKTLDLWSAA 
         :                                                                                                                          
 1kp9(B) : WEQFDEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIPMVQECASANGFTVTRVQSLQPHYAKTLDLWSAA 
           ______________________________________________171__________________________200__________________________________________ 

           _____________________________________________                                                                            
 1kph(D) : LQANKGQAIALQSEEVYERYMKYLTGCAEMFRIGYIDVNQFTCQK                                                                            
         :                                                                                                                          
 1kp9(B) : LQANKGQAIALQSEEVYERYMKYLTGCAEMFRIGYIDVNQFTCQK                                                                            
           _____________________________________________                                                                            

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
44.6
Translation
(A)
4.5
Closure
(%)
97.4
Bending Residues
( green )
  171 - 173
  200 - 205
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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