Cytochrome B6-F Complex Iron-Sulfur Subunit

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Cytochrome B6-F Complex Iron-Sulfur Subunit
  Conformer 1
(PDB)
2d2c (D)
  Conformer 2
(PDB)
2d2c (Q)
  Window Length 11
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 117 0.05   58 - 174
2 28 0.19   17 - 44

Sequence


           ___________________________40___________________________________________________________________________________________ 
 2d2c(D) : DMGRRQFMNLLAFGTVTGVALGALYPLVKYFIPPSGGAVGGGTTAKDKLGNNVKVSKFLESHNAGDRVLVQGLKGDPTYIVVESKEAIRDYGINAVCTHLGCVVPWNAAENKFKCPCHGS 
         :                                                                                                                          
 2d2c(Q) : DMGRRQFMNLLAFGTVTGVALGALYPLVKYFIPPSGGAVGGGTTAKDKLGNNVKVSKFLESHNAGDRVLVQGLKGDPTYIVVESKEAIRDYGINAVCTHLGCVVPWNAAENKFKCPCHGS 
           ___________________________40___________________________________________________________________________________________ 

           ________________________________________________                                                                         
 2d2c(D) : QYDETGRVIRGPAPLSLALCHATVQDDNIVLTPWTETDFRTGEKPWWV                                                                         
         :                                                                                                                          
 2d2c(Q) : QYDETGRVIRGPAPLSLALCHATVQDDNIVLTPWTETDFRTGEKPWWV                                                                         
           ________________________________________________                                                                         

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
7.8
Translation
(A)
1.0
Closure
(%)
39.1
Bending Residues
( green )
  40 - 58
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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