D-Alanine:d-Lactate Ligase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name D-Alanine:d-Lactate Ligase
  Conformer 1
(PDB)
1ehi (A)
  Conformer 2
(PDB)
1ehi (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 240 0.81   5 - 136   140 - 140   143 - 148   220 - 221   224 - 239   243 - 271   273 - 276   285 - 312   317 - 360
2 94 0.93   137 - 139   141 - 142   149 - 219   222 - 223   240 - 242   272 - 272   277 - 284   313 - 316

Sequence


           ________________________________________________________________________________________________________________________ 
 1ehi(A) : *KKRVALIFGGNSSEHDVSKRSAQNFYNAIEATGKYEIIVFAIAQNGFFLDTESSKKILALEDEQPIVDAFMKTVDASDPLARIHALKSAGDFDIFFPVVHGNLGEDGTLQGLFKLLDKP 
         :                                                                                                                          
 1ehi(B) : TKKRVALIFGGNSSEHDVSKRSAQNFYNAIEATGKYEIIVFAIAQNGFFLDTESSKKILALEDEQPIVDAFMKTVDASDPLARIHALKSAGDFDIFFPVVHGNLGEDGTLQGLFKLLDKP 
           ________________________________________________________________________________________________________________________ 

           ____________136_________148____________________________________________________________________219_________________239__ 
 1ehi(A) : YVGAPLRGHAVSFDKALTKELLTVNGIRNTKYIVVDPESANNWSWDKIVAELGNIVFVKAANQGSSVGISRVTNAEEYTEALSDSFQYDYKVLIEEAVNGARELEVGVIGNDQPLVSEIG 
         :                                                                                                                          
 1ehi(B) : YVGAPLRGHAVSFDKALTKELLTVNGIRNTKYIVVDPESANNWSWDKIVAELGNIVFVKAANQGSSVGISRVTNAEEYTEALSDSFQYDYKVLIEEAVNGARELEVGVIGNDQPLVSEIG 
           ____________536_________548____________________________________________________________________619_________________639__ 

           ________________________________276_____284_________________________312_316_____________________________________________ 
 1ehi(A) : AHTVPNQGSGDGWYDYNNKFVDNSAVHFQIPAQLSPEVTKEVKQMALDAYKVLNLRGEARMDFLLDENNVPYLGEPNTLPGFTNMSLFKRLWDYSDINNAKLVDMLIDYGFEDFAQNKKL 
         :                                                                                                                          
 1ehi(B) : AHTv----------------------HFQIPAQLSPEVTKEVKQMALDAYKVLNLRGEARMDFLLDENNVPYLGEPNTLPGFTNMSLFKRLWDYSDINNAKLVDMLIDYGFEDFAQNKKL 
           ________________________________676_____684_________________________712_716_____________________________________________ 

           _________                                                                                                                
 1ehi(A) : S********                                                                                                                
         :                                                                                                                          
 1ehi(B) : SYSFVSLGE                                                                                                                
           _________                                                                                                                

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
8.9
Translation
(A)
-0.7
Closure
(%)
88.1
Bending Residues
( green )
  136 - 137
  139 - 143
  148 - 149
  219 - 225
  239 - 273
  276 - 277
  284 - 285
  312 - 313
  316 - 317
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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